Detailed information NTG0445038

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HOO69_RS00775
• Genome accession: NZ_CP053541
• Coordinates: 140386..141255 (-)
• Length: 289 a.a.
• NCBI ID: WP_171801081.1
• Uniprot ID: A0AAE7AUJ3
• Organism: Vibrio europaeus strain NPI-1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 135386..146255

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HOO69_RS00740 (HOO69_00745)	rpsP	136405..136653 (+)	249	WP_004742593.1	30S ribosomal protein S16	-
HOO69_RS00745 (HOO69_00750)	rimM	136683..137231 (+)	549	WP_069667597.1	ribosome maturation factor RimM	-
HOO69_RS00750 (HOO69_00755)	trmD	137259..138002 (+)	744	WP_171801080.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
HOO69_RS00755 (HOO69_00760)	rplS	138044..138397 (+)	354	WP_004742596.1	50S ribosomal protein L19	-
HOO69_RS00760 (HOO69_00765)	yacG	138744..138938 (-)	195	WP_069667595.1	DNA gyrase inhibitor YacG	-
HOO69_RS00765 (HOO69_00770)	zapD	139001..139741 (-)	741	WP_004742598.1	cell division protein ZapD	-
HOO69_RS00770 (HOO69_00775)	coaE	139776..140384 (-)	609	WP_069667594.1	dephospho-CoA kinase	-
HOO69_RS00775 (HOO69_00780)	pilD	140386..141255 (-)	870	WP_171801081.1	A24 family peptidase	Machinery gene
HOO69_RS00780 (HOO69_00785)	pilC	141313..142536 (-)	1224	WP_171801082.1	type II secretion system F family protein	Machinery gene
HOO69_RS00785 (HOO69_00790)	pilB	142547..144238 (-)	1692	WP_171801083.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HOO69_RS00790 (HOO69_00795)	pilA	144244..144678 (-)	435	WP_069667590.1	pilin	Machinery gene
HOO69_RS00795 (HOO69_00800)	nadC	144921..145808 (-)	888	WP_069667589.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32240.28 Da
• Isoelectric Point: 4.7490

>NTDB_id=445038 HOO69_RS00775 WP_171801081.1 140386..141255(-) (pilD) [Vibrio europaeus strain NPI-1]
MDVFDYYPWLFPTLATLFGLIVGSFLNVVIHRLPIIMEREWRAECAESFPEYQISPPEGTYNLSVPNSTCPKCDTPIRII
DNIPVVSWLILKGKCRQCDNKISMRYPLIEVLSAGLCFVIANQFALSYFSIALLFFTFTLIAATFIDLDTMLLPDQLTLP
LTWAGIALALFGISPVSLQDAVIGAMAGYLALWSVYWLFKLATGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSLVGL
IFGLIQLKLKSQGIDKAFPFGPYLAIAGWLSMMLGNDILNWYLSNFLGI

Nucleotide

• Length: 870 bp

>NTDB_id=445038 HOO69_RS00775 WP_171801081.1 140386..141255(-) (pilD) [Vibrio europaeus strain NPI-1]
ATGGACGTTTTTGACTATTACCCTTGGCTTTTTCCTACACTAGCAACATTGTTTGGTCTTATCGTAGGCAGCTTTTTAAA
CGTGGTTATCCATCGCCTGCCGATCATCATGGAACGTGAATGGCGAGCCGAATGTGCGGAAAGCTTTCCCGAATACCAGA
TATCGCCTCCAGAAGGGACCTATAACCTCAGCGTTCCAAATTCAACTTGCCCTAAATGTGATACTCCCATTCGCATAATT
GATAACATTCCCGTTGTTAGTTGGCTGATATTGAAAGGAAAATGTCGTCAATGCGATAATAAAATAAGCATGCGCTACCC
TCTGATTGAGGTCCTATCAGCAGGCTTATGTTTTGTTATCGCTAATCAGTTTGCATTGAGCTACTTCTCGATTGCCTTGC
TGTTTTTCACCTTTACTCTTATCGCGGCGACCTTTATTGATCTCGACACCATGCTGCTGCCAGATCAACTCACTCTTCCT
TTAACATGGGCAGGAATTGCGCTCGCACTGTTTGGGATTAGCCCAGTGTCTCTGCAAGATGCGGTGATCGGTGCAATGGC
TGGCTATCTTGCTTTATGGTCAGTTTACTGGCTGTTTAAGCTAGCCACAGGCAAAGAAGGGATGGGTTACGGAGACTTTA
AACTGCTTGCCGCCTTAGGCGCTTGGCTTGGTTGGCAGTATTTGCCGATGATCATTTTGCTCTCTTCTTTAGTTGGCTTA
ATTTTTGGCCTCATACAGCTCAAATTGAAAAGCCAAGGAATCGACAAAGCCTTCCCATTTGGCCCTTATTTAGCTATTGC
AGGCTGGTTGAGTATGATGTTGGGAAATGACATTCTCAATTGGTATTTAAGCAACTTTTTAGGAATCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.74	100	0.747
pilD	Vibrio cholerae strain A1552	71.528	99.654	0.713
pilD	Acinetobacter baumannii D1279779	49.259	93.426	0.46
pilD	Acinetobacter nosocomialis M2	49.077	93.772	0.46
pilD	Neisseria gonorrhoeae MS11	47.273	95.156	0.45