Detailed information NTG0445037

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HOO69_RS00720
• Genome accession: NZ_CP053541
• Coordinates: 131341..132315 (+)
• Length: 324 a.a.
• NCBI ID: WP_069667601.1
• Uniprot ID: A0A178JC81
• Organism: Vibrio europaeus strain NPI-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 126341..137315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HOO69_RS00685 (HOO69_00690)	ftsB	126407..126685 (+)	279	WP_004742582.1	cell division protein FtsB	-
HOO69_RS00690 (HOO69_00695)	ispD	126686..127393 (+)	708	WP_069667606.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HOO69_RS00695 (HOO69_00700)	ispF	127397..127873 (+)	477	WP_004742584.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HOO69_RS00700 (HOO69_00705)	truD	127927..128973 (+)	1047	WP_171801077.1	tRNA pseudouridine(13) synthase TruD	-
HOO69_RS00705 (HOO69_00710)	surE	128970..129728 (+)	759	WP_171382768.1	5'/3'-nucleotidase SurE	-
HOO69_RS00710 (HOO69_00715)	-	129731..130357 (+)	627	WP_171382769.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HOO69_RS00715 (HOO69_00720)	nlpD	130360..131271 (+)	912	WP_171801078.1	murein hydrolase activator NlpD	-
HOO69_RS00720 (HOO69_00725)	rpoS	131341..132315 (+)	975	WP_069667601.1	RNA polymerase sigma factor RpoS	Regulator
HOO69_RS00725 (HOO69_00730)	-	132382..133653 (-)	1272	WP_069667600.1	CNNM domain-containing protein	-
HOO69_RS00730 (HOO69_00735)	-	133782..134576 (-)	795	WP_069667599.1	inner membrane protein YpjD	-
HOO69_RS00735 (HOO69_00740)	ffh	134785..136176 (+)	1392	WP_171801079.1	signal recognition particle protein	-
HOO69_RS00740 (HOO69_00745)	rpsP	136405..136653 (+)	249	WP_004742593.1	30S ribosomal protein S16	-
HOO69_RS00745 (HOO69_00750)	rimM	136683..137231 (+)	549	WP_069667597.1	ribosome maturation factor RimM	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37137.09 Da
• Isoelectric Point: 4.7775

>NTDB_id=445037 HOO69_RS00720 WP_069667601.1 131341..132315(+) (rpoS) [Vibrio europaeus strain NPI-1]
MSISNTATKVEEFEIGRETTETFQAVESAKPAQETKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDINNSDPEVS
TQDDDIKNSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMENLFS
VTED

Nucleotide

• Length: 975 bp

>NTDB_id=445037 HOO69_RS00720 WP_069667601.1 131341..132315(+) (rpoS) [Vibrio europaeus strain NPI-1]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAATTCGAAATCGGTCGAGAAACAACGGAAACGTTTCAAGCCGTAGA
ATCAGCAAAACCCGCACAAGAAACCAAAGAAGAGTTTGATGCATCGACCAAAAGTCTTGATGCTACCCAGCTTTACTTAG
GTGAAATTGGTTTTTCTCCACTACTTACCGCTGAAGAAGAAGTTCTGTATGCGCGTCGTGCCCTGCGAGGTGACGAAGCT
GCGCGTAAACGAATGATCGAAAGTAACCTTCGCTTAGTAGTGAAAATCTCACGTCGATACAGTAACCGTGGCCTAGCGCT
TCTTGATCTTATTGAAGAAGGAAATCTAGGATTGATCCGTGCGGTTGAGAAGTTCGACCCAGAGCGTGGTTTCAGATTCT
CCACCTACGCAACATGGTGGATTCGCCAAACCATTGAACGTGCATTAATGAACCAAACTCGCACGATTCGATTACCTATT
CACGTCGTCAAAGAGCTTAATATTTACCTGCGTACCGCCCGTGAACTTTCACAGAAACTTGACCATGAGCCTACTGCAGA
AGAGATCGCGACTCAGCTAGATAAGCCCGTCGATGATGTGAGTAAAATGCTCCGCCTTAATGAACGCATCAGTTCTGTTG
ATACGCCCATAGGTGGTGATGGTGAAAAGGCTCTGCTTGATATCATTCCAGATATCAATAACTCAGACCCTGAAGTCTCA
ACTCAAGATGACGACATCAAAAACTCTCTAATCCATTGGTTAGATGAGCTTAATCCAAAGCAAAAAGAAGTCTTAGCGCG
TCGCTTTGGCCTTCTTGGCTACGAGCCATCGACTCTTGAAGAAGTAGGTCGCGAGATTAACCTTACTCGTGAACGTGTTC
GTCAAATACAGGTAGAAGGTTTACGTCGCCTACGAGAGATATTGATCAAGCAGGGGCTAAACATGGAAAACCTATTTAGT
GTCACTGAAGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (165-238)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

• Sigma-70, region 4 (Sigma70_r4) (253-306)

3D structure

• AlphaFold DB: A0A178JC81

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.631	100	0.867