Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HNO51_RS11595 Genome accession   NZ_CP053381
Coordinates   2491912..2493144 (+) Length   410 a.a.
NCBI ID   WP_197447506.1    Uniprot ID   -
Organism   Billgrantia sulfidoxydans strain MCCC 1A11059     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2486912..2498144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO51_RS11570 (HNO51_11570) - 2487489..2488016 (-) 528 WP_197447502.1 HPP family protein -
  HNO51_RS11575 (HNO51_11575) - 2488273..2488797 (-) 525 WP_209537487.1 anti-virulence regulator CigR family protein -
  HNO51_RS11580 (HNO51_11580) - 2488881..2489108 (-) 228 WP_209537488.1 collagen-binding domain-containing protein -
  HNO51_RS11585 - 2489482..2489613 (-) 132 Protein_2282 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HNO51_RS11590 (HNO51_11590) pilB 2490017..2491798 (+) 1782 WP_209537489.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HNO51_RS11595 (HNO51_11595) pilC 2491912..2493144 (+) 1233 WP_197447506.1 type II secretion system F family protein Machinery gene
  HNO51_RS11600 (HNO51_11600) pilD 2493141..2493971 (+) 831 WP_234283473.1 A24 family peptidase Machinery gene
  HNO51_RS11605 (HNO51_11605) coaE 2493991..2494596 (+) 606 WP_209537490.1 dephospho-CoA kinase -
  HNO51_RS11610 (HNO51_11610) yacG 2494630..2494857 (+) 228 WP_197447508.1 DNA gyrase inhibitor YacG -
  HNO51_RS11615 (HNO51_11615) - 2494860..2495723 (+) 864 WP_209539222.1 DNA replication terminus site-binding protein -
  HNO51_RS11620 (HNO51_11620) - 2495751..2496488 (-) 738 WP_209537491.1 tellurite resistance TerB family protein -
  HNO51_RS11625 (HNO51_11625) - 2496517..2497116 (-) 600 WP_197447510.1 2-hydroxychromene-2-carboxylate isomerase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45116.86 Da        Isoelectric Point: 9.9184

>NTDB_id=444614 HNO51_RS11595 WP_197447506.1 2491912..2493144(+) (pilC) [Billgrantia sulfidoxydans strain MCCC 1A11059]
MATKTARAPRKLKLYRWRWTGKGPGGRLVSGEIVAAEKFEVERELANQNIIVKNVRRKSGLTGGMGTIKPRDTMLFARQM
ATMIRAGVPVLQAFQVVAESIRKPAMSAVVQQMMNEVAAGSSFSQALRNHPEHFDSLFCNLVEAGESSGSLDRMLDRIAT
YKEKVESLKGRVKKALWYPIAVILVGIGVTALLLIKVVPQFESLFHGFGAELPAMTRMTIALSEFAQQYWLWGLGGLIAF
VYLMRQGIKRSPTFAYRVHAFLLKVPVLGDIFDKSAVARYSRTLATTYGAGVPMVEALDIAAGATGNLVYERATRQIRED
VSTGQQLHFAMRLTERFPALAVQMVGIGEESGALDAMLNRVADYYEEEVDNKVDALTSLLEPLIIVVLGILVGGLVVSMY
LPIFELGTVL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=444614 HNO51_RS11595 WP_197447506.1 2491912..2493144(+) (pilC) [Billgrantia sulfidoxydans strain MCCC 1A11059]
ATGGCAACCAAAACGGCGAGAGCGCCAAGGAAGCTCAAGCTTTACCGCTGGCGCTGGACGGGCAAGGGTCCCGGCGGGCG
CCTGGTCAGCGGCGAGATAGTGGCCGCCGAGAAGTTCGAGGTGGAGCGCGAGCTGGCCAACCAGAACATCATCGTCAAGA
ACGTCCGCCGCAAGAGCGGGCTCACCGGCGGCATGGGCACCATCAAGCCCAGGGATACCATGCTCTTTGCCCGCCAGATG
GCCACGATGATCCGCGCCGGGGTGCCGGTGCTGCAGGCCTTTCAGGTAGTCGCCGAGAGTATCCGCAAGCCGGCCATGAG
CGCGGTGGTACAACAGATGATGAACGAGGTGGCGGCCGGCTCGAGCTTTTCCCAGGCGCTGCGCAATCACCCCGAGCACT
TTGACAGCCTGTTCTGCAACCTGGTGGAGGCCGGCGAGAGCTCCGGCTCGCTCGACCGCATGCTCGACCGGATCGCCACC
TACAAGGAGAAGGTGGAATCGCTCAAGGGCCGGGTGAAGAAGGCGCTGTGGTATCCGATCGCGGTGATCCTGGTGGGGAT
CGGGGTCACCGCGCTGCTGCTGATCAAGGTGGTACCCCAGTTCGAGAGCCTGTTCCACGGCTTCGGCGCCGAACTGCCGG
CCATGACCCGCATGACCATCGCCCTTTCCGAGTTCGCCCAGCAGTACTGGCTGTGGGGGCTTGGCGGCCTGATCGCCTTC
GTCTATCTGATGCGCCAGGGCATCAAGCGTTCGCCGACCTTTGCCTACCGCGTGCATGCGTTCCTGCTCAAGGTGCCGGT
GCTGGGCGACATCTTCGACAAGTCGGCGGTGGCGCGCTACTCCCGCACCCTGGCCACCACCTACGGCGCCGGCGTGCCCA
TGGTGGAAGCGCTGGACATCGCCGCCGGGGCGACCGGCAACCTGGTCTACGAGCGTGCCACCCGGCAGATCCGCGAGGAC
GTCTCCACCGGCCAGCAGCTCCACTTCGCGATGCGCCTGACCGAGCGCTTCCCCGCGCTGGCGGTGCAGATGGTCGGTAT
CGGCGAGGAGTCCGGCGCGCTGGACGCCATGCTCAACCGGGTGGCCGACTACTACGAGGAGGAGGTCGACAACAAGGTCG
ACGCCCTCACCTCGCTGCTCGAGCCGCTGATCATCGTGGTACTGGGGATCCTGGTCGGCGGCCTGGTGGTCTCCATGTAC
CTGCCGATCTTCGAACTGGGCACGGTGCTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(281-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.97

98.537

0.522
  pilC Acinetobacter baumannii D1279779

50.882

96.829

0.493
  pilC Acinetobacter baylyi ADP1

50.882

96.829

0.493
  pilC Legionella pneumophila strain ERS1305867

50.378

96.829

0.488
  pilC Vibrio cholerae strain A1552

43.596

99.024

0.432
  pilC Vibrio campbellii strain DS40M4

43.176

98.293

0.424
  pilG Neisseria meningitidis 44/76-A

43.814

94.634

0.415
  pilG Neisseria gonorrhoeae MS11

43.75

93.659

0.41
  pilC Thermus thermophilus HB27

36.725

98.293

0.361