Detailed information NTG0444615

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HNO51_RS11600
• Genome accession: NZ_CP053381
• Coordinates: 2493141..2493971 (+)
• Length: 276 a.a.
• NCBI ID: WP_234283473.1
• Uniprot ID: -
• Organism: Billgrantia sulfidoxydans strain MCCC 1A11059
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2488141..2498971

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HNO51_RS11575 (HNO51_11575)	-	2488273..2488797 (-)	525	WP_209537487.1	anti-virulence regulator CigR family protein	-
HNO51_RS11580 (HNO51_11580)	-	2488881..2489108 (-)	228	WP_209537488.1	collagen-binding domain-containing protein	-
HNO51_RS11585	-	2489482..2489613 (-)	132	Protein_2282	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HNO51_RS11590 (HNO51_11590)	pilB	2490017..2491798 (+)	1782	WP_209537489.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HNO51_RS11595 (HNO51_11595)	pilC	2491912..2493144 (+)	1233	WP_197447506.1	type II secretion system F family protein	Machinery gene
HNO51_RS11600 (HNO51_11600)	pilD	2493141..2493971 (+)	831	WP_234283473.1	A24 family peptidase	Machinery gene
HNO51_RS11605 (HNO51_11605)	coaE	2493991..2494596 (+)	606	WP_209537490.1	dephospho-CoA kinase	-
HNO51_RS11610 (HNO51_11610)	yacG	2494630..2494857 (+)	228	WP_197447508.1	DNA gyrase inhibitor YacG	-
HNO51_RS11615 (HNO51_11615)	-	2494860..2495723 (+)	864	WP_209539222.1	DNA replication terminus site-binding protein	-
HNO51_RS11620 (HNO51_11620)	-	2495751..2496488 (-)	738	WP_209537491.1	tellurite resistance TerB family protein	-
HNO51_RS11625 (HNO51_11625)	-	2496517..2497116 (-)	600	WP_197447510.1	2-hydroxychromene-2-carboxylate isomerase	-

Sequence

Protein

• Length: 276 a.a.
• Molecular weight: 30141.40 Da
• Isoelectric Point: 8.2163

>NTDB_id=444615 HNO51_RS11600 WP_234283473.1 2493141..2493971(+) (pilD) [Billgrantia sulfidoxydans strain MCCC 1A11059]
MSVLWPLAAVLGLCLGSFLNVVIVRLPVMLMLGWRAEAREALELPEEETPRFNLLVPRSLCPRCETPIAWHDNLPLIGWF
KRRGRCASCQARISPQYPLVELAGAALALAVLTLYGATWQGLFVFGACLALLALAVIDLRTQLLPDMMTLPLLWAGLLYQ
LLFQPLMLTSAVIGAMAGYLALWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPMVLILSAGVGAIVGILVQLAL
PRLRGAPMPFGPYLAASGWIALLVGEPLMATYISFI

Nucleotide

• Length: 831 bp

>NTDB_id=444615 HNO51_RS11600 WP_234283473.1 2493141..2493971(+) (pilD) [Billgrantia sulfidoxydans strain MCCC 1A11059]
GTGAGTGTGCTTTGGCCGCTGGCGGCCGTGCTGGGCCTGTGCCTGGGCAGCTTCCTCAACGTGGTGATCGTGCGCCTTCC
GGTCATGCTGATGCTGGGCTGGCGGGCCGAGGCCCGCGAGGCGCTGGAACTGCCCGAGGAGGAGACGCCCCGTTTCAACC
TGCTGGTGCCGCGCTCGCTCTGCCCGCGCTGTGAAACGCCCATCGCCTGGCACGACAACCTGCCGCTGATCGGCTGGTTC
AAGCGCCGCGGTCGCTGTGCCTCGTGCCAGGCCCGGATCAGCCCGCAATATCCGCTGGTGGAGCTGGCCGGCGCCGCCCT
GGCGCTGGCCGTGCTGACGCTCTACGGGGCCACCTGGCAGGGCCTGTTCGTGTTCGGCGCCTGCCTGGCGCTACTGGCCC
TGGCCGTGATCGACCTGCGCACCCAGCTGCTGCCGGACATGATGACCCTGCCGCTGCTGTGGGCCGGCCTGCTCTACCAG
CTGCTGTTCCAGCCGCTGATGCTCACCAGTGCGGTGATCGGGGCCATGGCGGGCTATCTTGCCCTGTGGAGCGTCTACTG
GCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACTTCAAGCTACTGGCGGCCCTGGGTGCCTGGCTCG
GCTGGCAGTACCTGCCGATGGTACTGATCCTTTCCGCCGGCGTGGGCGCCATCGTCGGCATCCTGGTGCAGCTCGCCCTG
CCCCGGCTGCGCGGCGCCCCGATGCCGTTCGGCCCCTACCTGGCGGCTTCGGGCTGGATCGCGCTGCTGGTGGGCGAACC
ATTGATGGCTACCTATATCAGCTTCATTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (10-112)

• Type IV leader peptidase family (Peptidase_A24) (128-234)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.727	99.638	0.525
pilD	Vibrio campbellii strain DS40M4	49.818	99.638	0.496
pilD	Acinetobacter baumannii D1279779	45.683	100	0.46
pilD	Acinetobacter nosocomialis M2	45.683	100	0.46
pilD	Neisseria gonorrhoeae MS11	47.17	96.014	0.453