Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   HNO51_RS11590 Genome accession   NZ_CP053381
Coordinates   2490017..2491798 (+) Length   593 a.a.
NCBI ID   WP_209537489.1    Uniprot ID   -
Organism   Billgrantia sulfidoxydans strain MCCC 1A11059     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2485017..2496798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO51_RS11555 (HNO51_11555) - 2485039..2485908 (+) 870 WP_197447499.1 AraC family transcriptional regulator -
  HNO51_RS11560 (HNO51_11560) - 2485968..2486351 (-) 384 WP_197447500.1 histone-like nucleoid-structuring protein, MvaT/MvaU family -
  HNO51_RS11565 (HNO51_11565) - 2486746..2487450 (+) 705 WP_197447501.1 Crp/Fnr family transcriptional regulator -
  HNO51_RS11570 (HNO51_11570) - 2487489..2488016 (-) 528 WP_197447502.1 HPP family protein -
  HNO51_RS11575 (HNO51_11575) - 2488273..2488797 (-) 525 WP_209537487.1 anti-virulence regulator CigR family protein -
  HNO51_RS11580 (HNO51_11580) - 2488881..2489108 (-) 228 WP_209537488.1 collagen-binding domain-containing protein -
  HNO51_RS11585 - 2489482..2489613 (-) 132 Protein_2282 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HNO51_RS11590 (HNO51_11590) pilB 2490017..2491798 (+) 1782 WP_209537489.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HNO51_RS11595 (HNO51_11595) pilC 2491912..2493144 (+) 1233 WP_197447506.1 type II secretion system F family protein Machinery gene
  HNO51_RS11600 (HNO51_11600) pilD 2493141..2493971 (+) 831 WP_234283473.1 A24 family peptidase Machinery gene
  HNO51_RS11605 (HNO51_11605) coaE 2493991..2494596 (+) 606 WP_209537490.1 dephospho-CoA kinase -
  HNO51_RS11610 (HNO51_11610) yacG 2494630..2494857 (+) 228 WP_197447508.1 DNA gyrase inhibitor YacG -
  HNO51_RS11615 (HNO51_11615) - 2494860..2495723 (+) 864 WP_209539222.1 DNA replication terminus site-binding protein -
  HNO51_RS11620 (HNO51_11620) - 2495751..2496488 (-) 738 WP_209537491.1 tellurite resistance TerB family protein -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 65125.56 Da        Isoelectric Point: 5.6737

>NTDB_id=444613 HNO51_RS11590 WP_209537489.1 2490017..2491798(+) (pilB) [Billgrantia sulfidoxydans strain MCCC 1A11059]
MNDYRTAPVGAHETASQQRAADTEGLRGFTRRLVEYELLSRAAAERAEHEAREAETSLLQHVIDTGLVTARQGTLCAAWE
YGLPLVDLDALRLASLPPASEYPEKLLRKLCVVPLSRRSHRLTVAVPFPSTLALLDELQFATGLSIEAVLCPVDQLMPVL
EAYLAQHDSSMMNELAGVDDAVSELEFEDGVDISDERATDAAQSGADDAPVVKFVNKILLDAIRRGASDIHFEPYETSYR
VRMRVDGMLMEAARPPFAMRSRIAARLKVMARLDISERRLPQDGAIKLKVSKTRSIDFRVNSLPTVYGEKIVLRILDPTS
AQIGIDALGFTPEQRALYEGVMDHPQGMILVTGPTGSGKTVTLYTGLNILNEVQRNICTAEDPVEIKVPGVNQVNVLPKI
GLDFASALRAFLRQDPDVVMVGEIRDLETAEIAVKASQTGHLVLSTVHTNSAAETLTRLANMGVPPFNIASSVSLIIAQR
LARRLCKHCRQEAELPREALLQEGFTEQEVNSATVYEAVGCKHCTHGYKGRVGIYEVVPISNAMSQLIMRNGNSMDFDSL
ARQEGHPDLRRSGLLKVMQGITSLTEVNRVTKD

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=444613 HNO51_RS11590 WP_209537489.1 2490017..2491798(+) (pilB) [Billgrantia sulfidoxydans strain MCCC 1A11059]
ATGAACGACTATCGAACGGCACCGGTCGGTGCTCATGAGACAGCCAGCCAGCAGCGTGCGGCTGATACCGAGGGGCTGCG
CGGTTTCACTCGCCGGCTGGTGGAGTATGAGCTGCTGTCCCGTGCGGCCGCCGAGCGGGCCGAGCACGAGGCGCGCGAGG
CGGAAACCAGCCTGCTGCAGCATGTGATCGACACCGGCCTGGTCACGGCCCGCCAGGGCACGCTGTGCGCGGCATGGGAG
TACGGCCTGCCGCTGGTGGACCTGGACGCGCTGCGCCTGGCGAGCCTGCCTCCGGCCAGTGAGTACCCCGAGAAGCTGCT
GCGCAAGCTGTGTGTCGTGCCGCTCAGCCGCCGCAGCCACCGTCTGACCGTGGCGGTGCCCTTCCCCTCCACCCTGGCCC
TGCTCGATGAGCTACAGTTCGCCACCGGGCTGAGCATCGAGGCCGTGCTCTGCCCGGTGGATCAACTGATGCCGGTGCTC
GAGGCCTACCTGGCCCAGCACGACTCGAGCATGATGAACGAGCTGGCCGGCGTGGACGATGCGGTCAGCGAGCTGGAATT
CGAGGATGGCGTCGACATCAGCGACGAGCGCGCCACCGACGCCGCCCAGAGCGGTGCCGACGATGCGCCGGTCGTCAAGT
TCGTCAACAAGATCCTGCTGGATGCCATACGCCGCGGCGCTTCGGACATCCATTTCGAGCCCTACGAGACCAGTTACCGG
GTGCGCATGCGCGTGGATGGCATGTTGATGGAGGCGGCTCGCCCGCCCTTCGCCATGCGATCGCGAATTGCCGCGCGCCT
GAAGGTGATGGCGCGGCTGGACATTTCCGAGCGCCGCCTGCCGCAGGACGGCGCGATCAAGCTGAAGGTTTCGAAGACCC
GCTCGATCGACTTCCGCGTGAACTCGCTGCCGACCGTGTACGGCGAAAAGATCGTGCTGCGTATCCTCGACCCCACCTCG
GCGCAGATCGGCATCGATGCGCTGGGCTTCACGCCGGAGCAGCGCGCACTCTACGAAGGCGTGATGGACCACCCCCAGGG
CATGATCCTGGTCACCGGCCCTACCGGCAGCGGCAAGACGGTGACGCTCTATACCGGCCTGAACATCCTCAACGAGGTGC
AGCGTAACATCTGTACCGCCGAGGACCCCGTCGAGATCAAGGTGCCCGGGGTCAACCAGGTCAACGTGCTGCCCAAGATC
GGGCTCGACTTCGCCAGCGCGCTGCGCGCCTTCCTGCGTCAGGACCCGGACGTGGTGATGGTGGGTGAGATCCGCGACCT
CGAGACCGCCGAGATCGCCGTCAAGGCATCGCAGACCGGCCACCTGGTGCTCTCCACGGTGCACACCAACTCCGCCGCGG
AGACCCTGACCCGGCTGGCCAACATGGGCGTGCCGCCGTTCAACATCGCCAGCTCCGTGAGCCTGATCATCGCCCAGCGC
CTGGCCCGGCGGCTGTGCAAGCACTGCCGCCAGGAGGCCGAACTGCCCCGCGAGGCGCTGCTGCAGGAGGGCTTCACCGA
GCAGGAGGTGAATAGTGCCACGGTGTACGAAGCCGTAGGCTGCAAGCACTGCACCCACGGCTACAAGGGGCGTGTGGGCA
TCTATGAAGTGGTACCGATCAGCAACGCCATGAGCCAGTTGATCATGCGCAACGGCAATTCGATGGATTTCGACAGCCTG
GCGCGCCAGGAGGGCCACCCGGACCTGCGCCGCAGCGGGCTGTTGAAGGTGATGCAGGGCATCACTAGCCTGACCGAGGT
CAATCGGGTCACGAAGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(217-484)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(69-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Legionella pneumophila strain ERS1305867

53.671

96.459

0.518
  pilB Acinetobacter baylyi ADP1

52.641

95.784

0.504
  pilB Acinetobacter baumannii D1279779

51.937

95.784

0.497
  pilB Vibrio cholerae strain A1552

49.107

94.435

0.464
  pilF Neisseria gonorrhoeae MS11

46.678

96.459

0.45
  pilB Vibrio campbellii strain DS40M4

47.928

93.592

0.449
  pilB Vibrio parahaemolyticus RIMD 2210633

47.473

93.423

0.444