Detailed information NTG0443462

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: HKM25_RS09630
• Genome accession: NZ_CP053210
• Coordinates: 1887277..1887672 (-)
• Length: 131 a.a.
• NCBI ID: WP_000282466.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 6A-10
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1882277..1892672

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKM25_RS09605 (HKM25_1964)	-	1882626..1882958 (-)	333	WP_001810556.1	helix-turn-helix transcriptional regulator	-
HKM25_RS09610 (HKM25_1965)	-	1882971..1883744 (-)	774	WP_000566040.1	class I SAM-dependent methyltransferase	-
HKM25_RS09615	-	1884192..1884947 (-)	756	Protein_1899	epoxyqueuosine reductase QueH	-
HKM25_RS09620 (HKM25_1969)	groL	1885085..1886707 (-)	1623	WP_000031573.1	chaperonin GroEL	-
HKM25_RS09625 (HKM25_1970)	groES	1886723..1887007 (-)	285	WP_000917330.1	co-chaperone GroES	-
HKM25_RS09630 (HKM25_1971)	ssbB/cilA	1887277..1887672 (-)	396	WP_000282466.1	single-stranded DNA-binding protein	Machinery gene
HKM25_RS09635 (HKM25_1972)	-	1887749..1888510 (-)	762	WP_001107755.1	SDR family NAD(P)-dependent oxidoreductase	-
HKM25_RS09640 (HKM25_1973)	ytpR	1888543..1889169 (-)	627	WP_000578306.1	YtpR family tRNA-binding protein	-
HKM25_RS09645 (HKM25_1974)	-	1889185..1889502 (-)	318	WP_000615775.1	thioredoxin family protein	-
HKM25_RS09650 (HKM25_1975)	-	1889499..1889798 (-)	300	WP_001818001.1	DUF4651 domain-containing protein	-
HKM25_RS11780 (HKM25_1976)	-	1889892..1890038 (+)	147	WP_000692801.1	hypothetical protein	-
HKM25_RS09660 (HKM25_1977)	-	1890095..1890286 (-)	192	WP_000291826.1	cell wall-binding protein	-
HKM25_RS09665 (HKM25_1978)	-	1890447..1891121 (-)	675	WP_000725751.1	membrane protein	-
HKM25_RS09670 (HKM25_1979)	-	1891127..1891573 (-)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
HKM25_RS09675 (HKM25_1980)	-	1891687..1892190 (-)	504	WP_000800942.1	phosphatase PAP2 family protein	-
HKM25_RS09680 (HKM25_1981)	-	1892187..1892549 (-)	363	WP_000078805.1	DUF2200 domain-containing protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14937.94 Da
• Isoelectric Point: 5.9409

>NTDB_id=443462 HKM25_RS09630 WP_000282466.1 1887277..1887672(-) (ssbB/cilA) [Streptococcus pneumoniae strain 6A-10]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVIEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=443462 HKM25_RS09630 WP_000282466.1 1887277..1887672(-) (ssbB/cilA) [Streptococcus pneumoniae strain 6A-10]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAACTATGTAATCGAAGTCCTTGTGACAGGATTCCAACTCTTAGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae Rx1	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae D39	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae R6	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae TIGR4	98.473	100	0.985
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	97.71	100	0.977
ssbA	Streptococcus mutans UA159	74.046	100	0.74
ssbB	Streptococcus sobrinus strain NIDR 6715-7	69.466	100	0.695
ssbB	Lactococcus lactis subsp. cremoris KW2	58.929	85.496	0.504
ssbA	Bacillus subtilis subsp. subtilis str. 168	50	80.916	0.405
ssb	Latilactobacillus sakei subsp. sakei 23K	46.018	86.26	0.397