Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FRAAU_RS05815 Genome accession   NC_017033
Coordinates   1268505..1269752 (-) Length   415 a.a.
NCBI ID   WP_014402638.1    Uniprot ID   H8L4F8
Organism   Frateuria aurantia DSM 6220     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1263505..1274752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRAAU_RS05790 (Fraau_1168) hfq 1264200..1264475 (+) 276 WP_014402633.1 RNA chaperone Hfq -
  FRAAU_RS05795 (Fraau_1169) hflX 1264611..1265960 (+) 1350 WP_041270405.1 ribosome rescue GTPase HflX -
  FRAAU_RS05800 (Fraau_1170) - 1265993..1266940 (+) 948 WP_014402635.1 Nudix family hydrolase -
  FRAAU_RS05805 (Fraau_1171) coaE 1266943..1267575 (-) 633 WP_014402636.1 dephospho-CoA kinase -
  FRAAU_RS05810 (Fraau_1172) pilD 1267572..1268423 (-) 852 WP_014402637.1 A24 family peptidase Machinery gene
  FRAAU_RS05815 (Fraau_1173) pilC 1268505..1269752 (-) 1248 WP_014402638.1 type II secretion system F family protein Machinery gene
  FRAAU_RS05820 (Fraau_1174) pilB 1269811..1271532 (-) 1722 WP_014402639.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FRAAU_RS05825 (Fraau_1175) - 1271803..1273614 (-) 1812 WP_014402640.1 DEAD/DEAH box helicase -
  FRAAU_RS05830 (Fraau_1176) - 1273780..1274529 (+) 750 WP_014402641.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 44814.83 Da        Isoelectric Point: 10.1670

>NTDB_id=44316 FRAAU_RS05815 WP_014402638.1 1268505..1269752(-) (pilC) [Frateuria aurantia DSM 6220]
MAPGPSLPPSAQTVPGLVTYEWVALDKRNKLMKGEMQGKNAALVKAELRRLGMNPRSVKERPKPLFGAAGKAVKPRDIAI
FSRQIATMMAAGVPMVQAFDIIAGGQRNIRFKNMLNDVRSGIESGSSLHEALGRYPQQFDELYRNLVHAGESAGVLDTVL
ATVATYKERIEAIKAKIKKALFYPVMVMVVALGVTMILLLFVVPVFQQTFSDAGAELPAPTQFVIGASKFMQSWWWLVIG
ALVAAIAGSIIGKRRSRAFAEVLDRLSLHLPVIGNILRQSAIARFARTLGVTFQAGVPLVEALEAVAGATGSVVYANAVR
AMRDDVAVGHQMQLAMRQTGLFPNMVVQMTAIGEESGALDSMLFKVADFYEEEVNNAVDTLSSLLEPLIMVVLGVLVGGM
VISIYLPIFKMAGTV

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=44316 FRAAU_RS05815 WP_014402638.1 1268505..1269752(-) (pilC) [Frateuria aurantia DSM 6220]
ATGGCCCCCGGCCCCAGCCTCCCGCCGTCAGCCCAGACCGTGCCCGGACTGGTCACCTATGAATGGGTCGCTCTGGACAA
GCGCAACAAGCTGATGAAGGGCGAGATGCAGGGCAAGAATGCAGCCCTGGTCAAGGCCGAGCTACGTCGCCTGGGCATGA
ATCCGCGCAGCGTCAAGGAGCGGCCCAAGCCGCTGTTCGGCGCTGCGGGCAAGGCCGTCAAGCCTCGCGACATCGCCATT
TTCAGTCGCCAGATCGCGACCATGATGGCCGCCGGTGTGCCCATGGTACAGGCCTTCGACATCATCGCCGGCGGTCAGCG
CAATATCCGCTTCAAGAACATGCTCAATGATGTCCGCTCGGGCATCGAGTCAGGCTCCTCCCTGCACGAGGCGCTGGGCC
GCTATCCCCAGCAGTTCGACGAGCTGTACCGCAATCTGGTCCATGCCGGCGAATCCGCCGGCGTGCTGGATACGGTGCTG
GCCACCGTCGCCACTTACAAGGAACGCATCGAGGCGATCAAGGCCAAGATCAAGAAGGCCTTGTTTTATCCGGTGATGGT
GATGGTGGTGGCACTGGGCGTGACCATGATCCTGCTGCTGTTCGTGGTCCCGGTCTTCCAGCAGACCTTCAGCGATGCCG
GCGCGGAGCTGCCGGCGCCGACCCAGTTCGTGATCGGCGCCTCGAAGTTCATGCAGTCCTGGTGGTGGCTGGTGATCGGC
GCCCTGGTCGCCGCGATCGCGGGCAGCATCATTGGCAAGCGTCGATCCAGGGCTTTTGCCGAAGTACTGGATCGGCTGTC
CCTGCATCTGCCGGTGATCGGCAACATCCTTCGCCAGTCGGCCATCGCACGTTTCGCCCGGACCCTGGGCGTCACCTTCC
AGGCCGGCGTGCCACTGGTGGAAGCCCTGGAAGCCGTCGCCGGCGCCACCGGCAGCGTGGTCTATGCCAACGCCGTCCGT
GCCATGCGTGATGACGTGGCAGTCGGTCACCAGATGCAGCTGGCGATGCGTCAGACCGGCCTGTTTCCCAATATGGTGGT
ACAGATGACCGCCATCGGCGAAGAATCCGGCGCACTGGACAGCATGCTGTTCAAGGTCGCGGATTTCTACGAGGAAGAGG
TCAACAATGCGGTCGATACCCTTTCCAGCCTGCTGGAACCCCTGATCATGGTGGTTCTGGGCGTCCTGGTCGGCGGCATG
GTGATCTCGATCTATCTGCCCATCTTCAAGATGGCCGGCACGGTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(285-407)

Type II secretion system (T2SS), protein F (T2SSF)

(81-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8L4F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.613

96.627

0.528
  pilC Pseudomonas stutzeri DSM 10701

53.535

95.422

0.511
  pilC Acinetobacter baumannii D1279779

50.614

98.072

0.496
  pilC Acinetobacter baylyi ADP1

49.37

95.663

0.472
  pilG Neisseria gonorrhoeae MS11

42.636

93.253

0.398
  pilG Neisseria meningitidis 44/76-A

42.377

93.253

0.395
  pilC Vibrio cholerae strain A1552

40.299

96.867

0.39
  pilC Thermus thermophilus HB27

37.709

100

0.381
  pilC Vibrio campbellii strain DS40M4

39.295

95.663

0.376

Multiple sequence alignment