Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FRAAU_RS05810 Genome accession   NC_017033
Coordinates   1267572..1268423 (-) Length   283 a.a.
NCBI ID   WP_014402637.1    Uniprot ID   H8L4F7
Organism   Frateuria aurantia DSM 6220     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1262572..1273423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRAAU_RS05785 (Fraau_1167) miaA 1263116..1264066 (+) 951 WP_014402632.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  FRAAU_RS05790 (Fraau_1168) hfq 1264200..1264475 (+) 276 WP_014402633.1 RNA chaperone Hfq -
  FRAAU_RS05795 (Fraau_1169) hflX 1264611..1265960 (+) 1350 WP_041270405.1 ribosome rescue GTPase HflX -
  FRAAU_RS05800 (Fraau_1170) - 1265993..1266940 (+) 948 WP_014402635.1 Nudix family hydrolase -
  FRAAU_RS05805 (Fraau_1171) coaE 1266943..1267575 (-) 633 WP_014402636.1 dephospho-CoA kinase -
  FRAAU_RS05810 (Fraau_1172) pilD 1267572..1268423 (-) 852 WP_014402637.1 A24 family peptidase Machinery gene
  FRAAU_RS05815 (Fraau_1173) pilC 1268505..1269752 (-) 1248 WP_014402638.1 type II secretion system F family protein Machinery gene
  FRAAU_RS05820 (Fraau_1174) pilB 1269811..1271532 (-) 1722 WP_014402639.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 30840.94 Da        Isoelectric Point: 8.9704

>NTDB_id=44315 FRAAU_RS05810 WP_014402637.1 1267572..1268423(-) (pilD) [Frateuria aurantia DSM 6220]
MPIFSPLIWAGWAALFGLIVGSFLNVVILRLPRRMEAEWRQEAQRCLELPTDAELPPGIVRKASHCPHCQHPLGLRDNIP
LLSWLMLRGRCRYCQAPISIQYPLVELAAALIGGITVFHTGANLHALAAMGLGWALLTLAVIDIRTQLLPDAITLPLLWA
GLLLSLWPFGPVPADAILGAAIGYLSLWSVYWLFRLLTGKEGMGHGDFKLLAALGAWMGPGALLPIILLSSLVGAVVGIG
LILGRHRQQGVPMAFGPFLAAAGWLWLITGHQLAPLWLQWLRP

Nucleotide


Download         Length: 852 bp        

>NTDB_id=44315 FRAAU_RS05810 WP_014402637.1 1267572..1268423(-) (pilD) [Frateuria aurantia DSM 6220]
ATGCCGATATTCTCTCCCTTGATCTGGGCCGGCTGGGCCGCCCTGTTTGGCCTGATCGTGGGCAGCTTTCTCAACGTAGT
GATCCTGCGCCTGCCGCGGCGCATGGAGGCCGAATGGCGGCAGGAGGCCCAGCGCTGCCTTGAGCTCCCGACCGATGCCG
AGCTGCCACCGGGCATCGTGCGCAAGGCCTCGCACTGCCCGCACTGTCAGCATCCGCTGGGACTGCGGGACAATATCCCC
TTGCTGAGCTGGCTCATGTTGCGCGGTCGCTGCCGTTACTGTCAGGCGCCGATCTCGATCCAGTACCCGCTGGTCGAGCT
GGCCGCCGCCTTGATCGGCGGCATCACCGTTTTTCATACCGGCGCCAATCTGCATGCACTGGCAGCCATGGGTCTGGGTT
GGGCTTTGCTGACGCTCGCGGTGATCGATATCCGTACCCAGCTGCTGCCTGATGCGATCACCCTGCCGCTGCTGTGGGCC
GGTCTGCTGCTGAGCTTGTGGCCCTTCGGGCCAGTACCGGCCGACGCCATTCTCGGTGCAGCCATCGGCTATCTCAGTCT
GTGGAGCGTGTACTGGCTGTTCCGTCTGCTCACCGGCAAGGAAGGCATGGGTCATGGTGACTTCAAGCTGCTGGCGGCAC
TGGGCGCATGGATGGGACCGGGCGCCCTGCTGCCCATCATCCTGCTGTCATCCCTGGTCGGCGCCGTGGTCGGCATCGGT
CTGATCCTGGGCCGCCACCGACAACAAGGCGTGCCGATGGCTTTCGGACCGTTTCTGGCGGCAGCCGGCTGGCTGTGGCT
GATCACCGGTCACCAGCTCGCCCCGCTGTGGCTGCAGTGGCTGCGGCCATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-119)

Type IV leader peptidase family (Peptidase_A24)

(132-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8L4F7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.708

97.88

0.516
  pilD Vibrio campbellii strain DS40M4

51.079

98.233

0.502
  pilD Acinetobacter nosocomialis M2

49.627

94.7

0.47
  pilD Acinetobacter baumannii D1279779

49.254

94.7

0.466
  pilD Neisseria gonorrhoeae MS11

46.484

90.459

0.42

Multiple sequence alignment