Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | IUD20_RS10325 | Genome accession | NZ_CP064334 |
| Coordinates | 2290702..2291148 (+) | Length | 148 a.a. |
| NCBI ID | WP_004090380.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2285702..2296148
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD20_RS10305 (IUD20_10305) | - | 2285950..2287287 (+) | 1338 | WP_004090387.1 | HAMP domain-containing sensor histidine kinase | - |
| IUD20_RS10310 (IUD20_10310) | coaE | 2287554..2288177 (-) | 624 | WP_004090385.1 | dephospho-CoA kinase | - |
| IUD20_RS10315 (IUD20_10315) | pilD | 2288189..2289052 (-) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| IUD20_RS10320 (IUD20_10320) | pilC | 2289059..2290261 (-) | 1203 | WP_011098309.1 | type II secretion system F family protein | Machinery gene |
| IUD20_RS10325 (IUD20_10325) | pilA | 2290702..2291148 (+) | 447 | WP_004090380.1 | pilin | Machinery gene |
| IUD20_RS10330 (IUD20_10330) | - | 2291394..2291603 (-) | 210 | WP_004090377.1 | hypothetical protein | - |
| IUD20_RS10335 (IUD20_10335) | pilA/pilAI | 2292457..2292897 (+) | 441 | WP_004090375.1 | pilin | Machinery gene |
| IUD20_RS10340 (IUD20_10340) | pilB | 2293740..2295473 (+) | 1734 | WP_004090374.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15388.46 Da Isoelectric Point: 8.5024
>NTDB_id=442872 IUD20_RS10325 WP_004090380.1 2290702..2291148(+) (pilA) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8]
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQVTAGLADITPGKVQAESLIADGKSTTNASDIGLRTDTTRCGI
TVKVENTGLANITCTIKGNSQVNGQTIAWNRSVDNSAGTNGANNGGQWTCNTTVTSDALRPSGCTAAK
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQVTAGLADITPGKVQAESLIADGKSTTNASDIGLRTDTTRCGI
TVKVENTGLANITCTIKGNSQVNGQTIAWNRSVDNSAGTNGANNGGQWTCNTTVTSDALRPSGCTAAK
Nucleotide
Download Length: 447 bp
>NTDB_id=442872 IUD20_RS10325 WP_004090380.1 2290702..2291148(+) (pilA) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8]
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAAGTCACCGCGGGACTGGCTGACATTACACCGGGTAAGGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGAGTACAACCAATGCGAGCGATATTGGACTGCGCACCGACACCACTCGTTGTGGGATT
ACCGTTAAAGTCGAAAACACCGGACTTGCCAACATCACATGTACGATTAAGGGCAATTCTCAGGTGAATGGTCAAACCAT
CGCTTGGAATCGTAGCGTCGATAACTCCGCGGGCACCAATGGCGCCAATAATGGAGGTCAGTGGACATGCAACACCACTG
TGACATCCGATGCACTGAGACCTTCCGGCTGCACTGCCGCTAAATAA
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAAGTCACCGCGGGACTGGCTGACATTACACCGGGTAAGGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGAGTACAACCAATGCGAGCGATATTGGACTGCGCACCGACACCACTCGTTGTGGGATT
ACCGTTAAAGTCGAAAACACCGGACTTGCCAACATCACATGTACGATTAAGGGCAATTCTCAGGTGAATGGTCAAACCAT
CGCTTGGAATCGTAGCGTCGATAACTCCGCGGGCACCAATGGCGCCAATAATGGAGGTCAGTGGACATGCAACACCACTG
TGACATCCGATGCACTGAGACCTTCCGGCTGCACTGCCGCTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.177 |
99.324 |
0.419 |
| pilA | Vibrio cholerae strain A1552 |
42.177 |
99.324 |
0.419 |
| pilA | Vibrio cholerae C6706 |
42.177 |
99.324 |
0.419 |
| pilA | Acinetobacter baumannii strain A118 |
41.333 |
100 |
0.419 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.541 |
100 |
0.405 |
| pilA | Pseudomonas aeruginosa PAK |
36.875 |
100 |
0.399 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.726 |
98.649 |
0.392 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
37.162 |
100 |
0.372 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
34.591 |
100 |
0.372 |