Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   HHK01_RS13685 Genome accession   NZ_CP052135
Coordinates   2783636..2784022 (-) Length   128 a.a.
NCBI ID   WP_170008299.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2778636..2789022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS13670 - 2779461..2782271 (+) 2811 WP_228027583.1 DEAD/DEAH box helicase -
  HHK01_RS13675 - 2782493..2782900 (-) 408 WP_170008297.1 hypothetical protein -
  HHK01_RS13680 - 2783203..2783547 (-) 345 WP_170008298.1 hypothetical protein -
  HHK01_RS13685 ssbB 2783636..2784022 (-) 387 WP_170008299.1 single-stranded DNA-binding protein Machinery gene
  HHK01_RS13690 - 2784368..2784832 (+) 465 WP_170008300.1 YwpF family protein -
  HHK01_RS13695 - 2784912..2786054 (+) 1143 WP_170008301.1 amidohydrolase -
  HHK01_RS13700 - 2786449..2787534 (-) 1086 WP_170008302.1 AbrB family transcriptional regulator -
  HHK01_RS13705 - 2788245..2788541 (-) 297 WP_170008303.1 hypothetical protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14253.99 Da        Isoelectric Point: 8.4947

>NTDB_id=441459 HHK01_RS13685 WP_170008299.1 2783636..2784022(-) (ssbB) [Bacillus fonticola strain CS13]
MINQVTVVGRLTKDPERRATSDGTSVSNVTLAVNRSFTNQQGGVDTDFIPCILWRKMAENTVKYCRKGSVVGVVGRIQTR
NYENQEGKRVYVTEVVAEQIRFLGGQSTTERNESANSDRSSIEEVLLP

Nucleotide


Download         Length: 387 bp        

>NTDB_id=441459 HHK01_RS13685 WP_170008299.1 2783636..2784022(-) (ssbB) [Bacillus fonticola strain CS13]
TTGATTAACCAAGTGACAGTTGTCGGGAGGTTAACGAAAGATCCTGAACGAAGAGCCACTTCTGACGGAACATCTGTCTC
GAATGTCACGCTTGCTGTCAATCGCTCGTTTACGAATCAGCAAGGAGGAGTGGATACGGATTTTATCCCTTGTATTTTAT
GGAGGAAGATGGCTGAAAACACGGTCAAATACTGCCGAAAGGGTTCGGTTGTAGGTGTTGTCGGTCGTATTCAAACACGC
AACTACGAAAACCAGGAAGGCAAGCGTGTCTATGTGACAGAAGTAGTCGCTGAACAAATCCGCTTTCTTGGTGGCCAATC
GACTACAGAACGTAACGAATCCGCTAACTCCGATCGCTCGTCTATCGAAGAAGTGCTGCTTCCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.078

80.469

0.516
  ssb Latilactobacillus sakei subsp. sakei 23K

55.856

86.719

0.484
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.194

80.469

0.484
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.157

99.219

0.398
  ssbB/cilA Streptococcus mitis NCTC 12261

37.405

100

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

36.641

100

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

36.641

100

0.375
  ssbB/cilA Streptococcus pneumoniae D39

36.641

100

0.375
  ssbB/cilA Streptococcus pneumoniae R6

36.641

100

0.375
  ssbB Lactococcus lactis subsp. cremoris KW2

42.105

89.063

0.375
  ssbB/cilA Streptococcus mitis SK321

35.878

100

0.367