Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HED66_RS13755 Genome accession   NZ_CP051883
Coordinates   3036853..3038094 (+) Length   413 a.a.
NCBI ID   WP_021140339.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain SRW-OG1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3031853..3043094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HED66_RS13730 ampD 3032229..3032801 (-) 573 WP_169047635.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HED66_RS13735 - 3032951..3033421 (+) 471 WP_011898292.1 retropepsin-like aspartic protease family protein -
  HED66_RS13740 nadC 3033426..3034283 (+) 858 WP_111588902.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HED66_RS13745 - 3034619..3035011 (+) 393 WP_083195368.1 pilin -
  HED66_RS13750 pilB 3035018..3036724 (+) 1707 WP_058394588.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  HED66_RS13755 pilC 3036853..3038094 (+) 1242 WP_021140339.1 type II secretion system F family protein Machinery gene
  HED66_RS13760 pilD 3038158..3039033 (+) 876 WP_058394589.1 prepilin peptidase Machinery gene
  HED66_RS13765 coaE 3039053..3039667 (+) 615 WP_169046904.1 dephospho-CoA kinase -
  HED66_RS13770 zapD 3039705..3040427 (+) 723 WP_169046905.1 cell division protein ZapD -
  HED66_RS13775 yacG 3040437..3040631 (+) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  HED66_RS13780 mutT 3040709..3041116 (-) 408 WP_111588905.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45325.42 Da        Isoelectric Point: 9.7813

>NTDB_id=441328 HED66_RS13755 WP_021140339.1 3036853..3038094(+) (pilC) [Aeromonas salmonicida strain SRW-OG1]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTRVSKKSQGLFSKGGARIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQDWWYVIFGGIG
LGIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=441328 HED66_RS13755 WP_021140339.1 3036853..3038094(+) (pilC) [Aeromonas salmonicida strain SRW-OG1]
ATGGCAACGCTAACGCAAAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTCCGCTGGAGCGGGGTAAATCGCAAGGGTCA
GAAGGTATCCGGCGAGCTGCAGGCCGACAGCATCAATACGGTCAAGGCCGAACTGCGCAAGCAGGGGGTCAATGTCACCA
GAGTGAGCAAAAAGAGCCAGGGGCTTTTTTCCAAGGGTGGCGCCAGGATCAAACCGATGGATATCGCCATCGTTTCCCGT
CAGATCACCACAATGCTCTCCGCCGGGGTACCTCTGGTACAGAGCCTGCAGATCATAGCCCGCAGCCATGAAAAAGCCGC
CATGCGAGAGCTGATGGGCCAGATCGCTGCGGATGTGGAGACAGGCACCCCGATGTCAGATGCCCTGCGCCGCCACCCTC
GCCACTTTGATGCGCTCTATTGCGATCTGGTGGAAGCGGGCGAGCAATCCGGCGCCCTGGAAACCATCTACGATCGCATC
GCCACCTACAGAGAAAAGTCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCGGCCATGGTCATCCTAGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTCGAGGACATCTTCAAGAGCTTTGGCGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATTGGCATCTCCCGCTTCATGCAGGATTGGTGGTATGTGATTTTTGGCGGGATAGGG
CTTGGCATTTTCCTTTATGTACGAGCCTGGCGCGCGTCCCAGAAGGTCAAAGACAACACAGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCCCGCACCCTTTCCACCACCTTCTCGGCGGGCA
TACCCCTAGTGGATGCACTGATCTCGGCCGCCGGCGCCTCAGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAAGTGGTAGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAGCAAGAGGTCGATGACT
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCCCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTCGTTGCC
ATGTACCTGCCCATCTTCAAGCTGGGTGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

52.645

96.126

0.506
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.382

97.094

0.46
  pilC Vibrio campbellii strain DS40M4

46.287

97.821

0.453
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366