Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HG420_RS12095 Genome accession   NZ_CP051518
Coordinates   37041..37388 (-) Length   115 a.a.
NCBI ID   WP_241693831.1    Uniprot ID   -
Organism   Lactococcus cremoris strain F     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32041..42388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG420_RS00170 (HG420_00175) - 32288..32503 (-) 216 WP_014572212.1 F0F1 ATP synthase subunit C -
  HG420_RS00175 (HG420_00180) - 32686..33462 (-) 777 WP_014572211.1 alpha/beta hydrolase family protein -
  HG420_RS00180 (HG420_00185) - 33746..34050 (-) 305 Protein_35 DNA internalization-related competence protein ComEC/Rec2 -
  HG420_RS00185 (HG420_00190) - 34071..34961 (-) 891 WP_081213191.1 IS982-like element IS982B family transposase -
  HG420_RS12090 comEC 35038..35547 (-) 510 WP_228764033.1 MBL fold metallo-hydrolase Machinery gene
  HG420_RS00190 (HG420_00195) comEC 35544..36815 (-) 1272 WP_324187032.1 ComEC/Rec2 family competence protein Machinery gene
  HG420_RS12095 comEA 37041..37388 (-) 348 WP_241693831.1 SLBB domain-containing protein Machinery gene
  HG420_RS00200 (HG420_00205) - 37654..39015 (-) 1362 WP_168784105.1 ABC transporter permease -
  HG420_RS00205 (HG420_00210) - 39012..39944 (-) 933 WP_014572202.1 ABC transporter ATP-binding protein -
  HG420_RS00210 (HG420_00215) - 40050..40448 (-) 399 WP_011676775.1 hypothetical protein -
  HG420_RS00215 (HG420_00220) - 40565..41124 (-) 560 Protein_43 N-acetyltransferase family protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12436.15 Da        Isoelectric Point: 8.4591

>NTDB_id=439487 HG420_RS12095 WP_241693831.1 37041..37388(-) (comEA) [Lactococcus cremoris strain F]
MVDLKGAVAKPNVYQISSDERLVDLIRQAGGFTDQADQKSINLSSKLKDEEVIYVPKLGESLSSESTDSPISSSVSNQVS
TTSGPKININKADLTELQKLTGIGQKKRKILLIFA

Nucleotide


Download         Length: 348 bp        

>NTDB_id=439487 HG420_RS12095 WP_241693831.1 37041..37388(-) (comEA) [Lactococcus cremoris strain F]
ATGGTTGATTTGAAAGGAGCGGTTGCAAAACCTAATGTATACCAAATTTCGTCAGATGAGCGCCTTGTTGATTTAATTAG
GCAAGCGGGAGGATTTACTGACCAAGCAGACCAAAAATCAATCAATCTGTCATCGAAACTTAAAGATGAAGAAGTGATTT
ATGTACCAAAACTTGGGGAAAGTTTAAGTTCAGAAAGTACTGACAGTCCTATTAGCAGCTCTGTCAGTAATCAAGTTTCA
ACGACAAGTGGTCCAAAAATAAATATCAATAAAGCAGACCTGACAGAATTACAAAAACTGACTGGAATTGGTCAAAAAAA
GCGCAAGATATTATTGATTTTCGCATGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(1-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

88.596

99.13

0.878
  comEA Latilactobacillus sakei subsp. sakei 23K

40.769

100

0.461
  comEA/celA/cilE Streptococcus mitis SK321

45.283

92.174

0.417
  comEA Streptococcus thermophilus LMD-9

39.496

100

0.409
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

43.396

92.174

0.4
  comEA/celA/cilE Streptococcus pneumoniae D39

42.453

92.174

0.391
  comEA/celA/cilE Streptococcus pneumoniae Rx1

42.453

92.174

0.391
  comEA/celA/cilE Streptococcus pneumoniae R6

42.453

92.174

0.391
  comEA/celA/cilE Streptococcus mitis NCTC 12261

41.509

92.174

0.383
  comEA Staphylococcus aureus N315

40.187

93.043

0.374
  comEA Staphylococcus aureus MW2

40.187

93.043

0.374