Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   HG420_RS12090 Genome accession   NZ_CP051518
Coordinates   35038..35547 (-) Length   169 a.a.
NCBI ID   WP_228764033.1    Uniprot ID   -
Organism   Lactococcus cremoris strain F     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 34071..34961 35038..35547 flank 77


Gene organization within MGE regions


Location: 34071..35547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG420_RS00185 (HG420_00190) - 34071..34961 (-) 891 WP_081213191.1 IS982-like element IS982B family transposase -
  HG420_RS12090 comEC 35038..35547 (-) 510 WP_228764033.1 MBL fold metallo-hydrolase Machinery gene

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18909.59 Da        Isoelectric Point: 6.9787

>NTDB_id=439486 HG420_RS12090 WP_228764033.1 35038..35547(-) (comEC) [Lactococcus cremoris strain F]
MRASITAVDIGQGDSIFLQDKFNKENILIDTGGRLALPQKNWQKAQTQSNADKTLIPYLESMGVAHIDQLILTHTDADHV
GDFLSLADKIKIREIWVSPGELTNISFVEKLKKAKIPIHVSKVGDKIPIFDSFLQVLSNGYTKKGDNNDSIVTYGNFYHT
KFLFTDPNC

Nucleotide


Download         Length: 510 bp        

>NTDB_id=439486 HG420_RS12090 WP_228764033.1 35038..35547(-) (comEC) [Lactococcus cremoris strain F]
ATGAGAGCAAGCATTACAGCAGTTGATATCGGACAAGGAGATAGTATTTTTCTACAAGATAAGTTTAATAAAGAAAACAT
TCTGATTGATACTGGGGGACGACTTGCTCTTCCTCAAAAAAATTGGCAAAAAGCGCAGACGCAATCAAATGCTGACAAAA
CGCTTATCCCTTATTTAGAATCCATGGGGGTGGCTCATATTGACCAACTTATTCTGACTCATACAGATGCTGACCATGTT
GGCGATTTCTTGTCCTTAGCTGATAAAATAAAAATAAGAGAAATCTGGGTCAGTCCGGGAGAATTAACCAACATTAGTTT
TGTGGAAAAATTAAAAAAAGCAAAAATTCCGATTCATGTTAGTAAAGTTGGGGATAAAATTCCGATTTTTGATAGTTTTC
TTCAAGTTTTATCAAATGGTTACACTAAAAAAGGGGATAATAATGATTCCATAGTGACTTATGGAAACTTTTACCATACA
AAATTTCTTTTTACAGACCCGAATTGCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(11-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

99.394

97.633

0.97
  comEC/celB Streptococcus mitis SK321

47.305

98.817

0.467
  comEC/celB Streptococcus pneumoniae TIGR4

45.509

98.817

0.45
  comEC/celB Streptococcus pneumoniae Rx1

44.91

98.817

0.444
  comEC/celB Streptococcus pneumoniae D39

44.91

98.817

0.444
  comEC/celB Streptococcus pneumoniae R6

44.91

98.817

0.444
  comEC/celB Streptococcus mitis NCTC 12261

44.311

98.817

0.438
  comEC Latilactobacillus sakei subsp. sakei 23K

38.037

96.45

0.367