Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HGN30_RS06160 Genome accession   NZ_CP051467
Coordinates   1391284..1392543 (-) Length   419 a.a.
NCBI ID   WP_005414309.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain NEB515     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386284..1397543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGN30_RS06130 (HGN30_06130) - 1386306..1386776 (+) 471 WP_005410805.1 hypothetical protein -
  HGN30_RS06135 (HGN30_06135) - 1386785..1387462 (+) 678 WP_005410804.1 response regulator transcription factor -
  HGN30_RS06140 (HGN30_06140) - 1387467..1388795 (+) 1329 WP_005410803.1 HAMP domain-containing sensor histidine kinase -
  HGN30_RS06145 (HGN30_06145) - 1389278..1389664 (+) 387 WP_005414311.1 hypothetical protein -
  HGN30_RS06150 (HGN30_06150) coaE 1389790..1390401 (-) 612 WP_005414310.1 dephospho-CoA kinase -
  HGN30_RS06155 (HGN30_06155) - 1390413..1391276 (-) 864 WP_005410800.1 A24 family peptidase -
  HGN30_RS06160 (HGN30_06160) pilC 1391284..1392543 (-) 1260 WP_005414309.1 type II secretion system F family protein Machinery gene
  HGN30_RS06165 (HGN30_06165) - 1392896..1393318 (+) 423 WP_061201472.1 pilin -
  HGN30_RS06170 (HGN30_06170) pilA/pilAI 1393471..1393878 (+) 408 WP_005414307.1 pilin Machinery gene
  HGN30_RS06175 (HGN30_06175) pilB 1394101..1395834 (+) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HGN30_RS06180 (HGN30_06180) pilR 1395960..1397333 (-) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45872.30 Da        Isoelectric Point: 10.1071

>NTDB_id=438696 HGN30_RS06160 WP_005414309.1 1391284..1392543(-) (pilC) [Stenotrophomonas maltophilia strain NEB515]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPIKPKD
IAFFSRQMATMMKSGVPIVSSLDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQLVVNLSRFMVSWWWL
MLLIAIGAAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=438696 HGN30_RS06160 WP_005414309.1 1391284..1392543(-) (pilC) [Stenotrophomonas maltophilia strain NEB515]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTACGCCGCC
AGGGCATCAACCCGGGACAGGTCAAGCCCAAGTCGAAGCCGCTGTTCGGCGCTGCCGGCAGCCCGATCAAGCCGAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCAACGATGATGAAATCCGGCGTGCCGATCGTGTCGTCGCTTGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGCTCCTCGATGTACGAGG
CGATCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGTGAAGGCGCCGGCGTTCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGTGCCGAGCTGCCCGCCTTCACCCAGCTGGTGGTGAACCTGTCACGGTTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTCATCGCGATCGGTGCCGCAGTCGGCGCGATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTACCAGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCTACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTTTCGGTGGGTTACCCGGTGAACATGTCGATGAAACAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

94.511

0.525
  pilC Acinetobacter baylyi ADP1

51.351

97.136

0.499
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baumannii D1279779

49.386

97.136

0.48
  pilG Neisseria gonorrhoeae MS11

45.137

95.704

0.432
  pilG Neisseria meningitidis 44/76-A

44.888

95.704

0.43
  pilC Vibrio cholerae strain A1552

41.626

96.897

0.403
  pilC Vibrio campbellii strain DS40M4

40.898

95.704

0.391
  pilC Thermus thermophilus HB27

37.811

95.943

0.363