Detailed information NTG0438699

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HGN30_RS06180
• Genome accession: NZ_CP051467
• Coordinates: 1395960..1397333 (-)
• Length: 457 a.a.
• NCBI ID: WP_005410795.1
• Uniprot ID: A0A854E393
• Organism: Stenotrophomonas maltophilia strain NEB515
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1390960..1402333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGN30_RS06160 (HGN30_06160)	pilC	1391284..1392543 (-)	1260	WP_005414309.1	type II secretion system F family protein	Machinery gene
HGN30_RS06165 (HGN30_06165)	-	1392896..1393318 (+)	423	WP_061201472.1	pilin	-
HGN30_RS06170 (HGN30_06170)	pilA/pilAI	1393471..1393878 (+)	408	WP_005414307.1	pilin	Machinery gene
HGN30_RS06175 (HGN30_06175)	pilB	1394101..1395834 (+)	1734	WP_005414305.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HGN30_RS06180 (HGN30_06180)	pilR	1395960..1397333 (-)	1374	WP_005410795.1	sigma-54 dependent transcriptional regulator	Regulator
HGN30_RS06185 (HGN30_06185)	-	1397394..1399007 (-)	1614	WP_005414304.1	ATP-binding protein	-
HGN30_RS06190 (HGN30_06190)	sucC	1399365..1400534 (+)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
HGN30_RS06195 (HGN30_06195)	sucD	1400556..1401431 (+)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49515.76 Da
• Isoelectric Point: 6.4407

>NTDB_id=438699 HGN30_RS06180 WP_005410795.1 1395960..1397333(-) (pilR) [Stenotrophomonas maltophilia strain NEB515]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=438699 HGN30_RS06180 WP_005410795.1 1395960..1397333(-) (pilR) [Stenotrophomonas maltophilia strain NEB515]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAGCTGGTCAGCGAGATTGCCCAACACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCTGTGGAGGCACTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCGGCACCGGGCCCCAACG
CCGAACAGGGCGGGCGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCATGCCCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGTTTCAGCGGCGCACACGCCGACAAGCCTGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGGGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CAACGAGGAGCCGGTGGATGTCCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCACTGCGCGAACGCCGCCAGGACCTGCCCGAA
CTGGCCGCCGCCGTGCTGGCCCGCCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCCTCGGCGCTGGAAGC
ACTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCGCAGCACGCGCCGCGTGCACCCGGCAGTGCCGCGCCCGCCGAAGCCGTG
GCCGACCTGCAGCCGGGCAGCGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

3D structure

• AlphaFold DB: A0A854E393

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.656	99.344	0.632
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49
luxO	Vibrio cholerae strain A1552	37.079	97.374	0.361