Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   HGN30_RS06170 Genome accession   NZ_CP051467
Coordinates   1393471..1393878 (+) Length   135 a.a.
NCBI ID   WP_005414307.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain NEB515     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1388471..1398878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGN30_RS06145 (HGN30_06145) - 1389278..1389664 (+) 387 WP_005414311.1 hypothetical protein -
  HGN30_RS06150 (HGN30_06150) coaE 1389790..1390401 (-) 612 WP_005414310.1 dephospho-CoA kinase -
  HGN30_RS06155 (HGN30_06155) - 1390413..1391276 (-) 864 WP_005410800.1 A24 family peptidase -
  HGN30_RS06160 (HGN30_06160) pilC 1391284..1392543 (-) 1260 WP_005414309.1 type II secretion system F family protein Machinery gene
  HGN30_RS06165 (HGN30_06165) - 1392896..1393318 (+) 423 WP_061201472.1 pilin -
  HGN30_RS06170 (HGN30_06170) pilA/pilAI 1393471..1393878 (+) 408 WP_005414307.1 pilin Machinery gene
  HGN30_RS06175 (HGN30_06175) pilB 1394101..1395834 (+) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HGN30_RS06180 (HGN30_06180) pilR 1395960..1397333 (-) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14272.52 Da        Isoelectric Point: 6.2068

>NTDB_id=438697 HGN30_RS06170 WP_005414307.1 1393471..1393878(+) (pilA/pilAI) [Stenotrophomonas maltophilia strain NEB515]
MNTQKGFTLIELMIVVAIIAILAAIAMVAFQPYIVRTQLTAALADISPGKTLVEIVVYQGRPVSEVTPQLIGGAQNAHCS
SVEAELSDSGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC

Nucleotide


Download         Length: 408 bp        

>NTDB_id=438697 HGN30_RS06170 WP_005414307.1 1393471..1393878(+) (pilA/pilAI) [Stenotrophomonas maltophilia strain NEB515]
ATGAACACACAGAAGGGCTTCACGCTCATCGAGCTGATGATCGTGGTGGCCATCATTGCCATACTTGCCGCGATCGCGAT
GGTGGCATTTCAGCCTTACATCGTTCGCACCCAGTTGACGGCCGCGCTGGCCGACATCAGCCCTGGCAAGACGCTGGTGG
AGATCGTTGTCTATCAGGGGCGTCCTGTCAGTGAGGTTACGCCTCAACTTATCGGCGGCGCCCAGAACGCCCACTGCTCC
AGCGTCGAAGCCGAACTCAGCGATTCCGGTGTCGGCCACATCAGCTGCACCCTGAAGGGACACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACAG
GCTGCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

46.763

100

0.481
  pilA Acinetobacter baumannii strain A118

42.336

100

0.43
  pilA Pseudomonas aeruginosa PAK

38.255

100

0.422
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.176

100

0.415
  comP Acinetobacter baylyi ADP1

34.932

100

0.378
  pilA2 Legionella pneumophila strain ERS1305867

35.507

100

0.363