Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IM720_RS01295 Genome accession   NZ_CP063233
Coordinates   293210..294304 (+) Length   364 a.a.
NCBI ID   WP_150055404.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain KF1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 288210..299304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM720_RS01275 (IM720_01275) rsmB 289398..290708 (-) 1311 WP_069077291.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  IM720_RS01280 (IM720_01280) fmt 290705..291658 (-) 954 WP_102623671.1 methionyl-tRNA formyltransferase -
  IM720_RS01285 (IM720_01285) def 291728..292234 (-) 507 WP_024072570.1 peptide deformylase -
  IM720_RS01290 (IM720_01290) - 292370..293146 (+) 777 WP_193690002.1 peptidoglycan-binding protein -
  IM720_RS01295 (IM720_01295) dprA 293210..294304 (+) 1095 WP_150055404.1 DNA-processing protein DprA Machinery gene
  IM720_RS01300 (IM720_01300) - 294359..294916 (+) 558 WP_193690003.1 L-threonylcarbamoyladenylate synthase -
  IM720_RS01305 (IM720_01305) - 295021..295998 (-) 978 WP_024072574.1 NADPH:quinone reductase -
  IM720_RS01310 (IM720_01310) hemF 296175..297107 (+) 933 WP_024072575.1 oxygen-dependent coproporphyrinogen oxidase -
  IM720_RS01315 (IM720_01315) aroE 297107..297925 (+) 819 WP_168233014.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38534.40 Da        Isoelectric Point: 7.3363

>NTDB_id=437607 IM720_RS01295 WP_150055404.1 293210..294304(+) (dprA) [Pseudomonas fluorescens strain KF1]
MFPINRSEISPSELEARLRLHRLPELGPKRFRLLIEAFGCASKALSAPASAWRSLGLPAISGDARRSHEVRDGASAALAW
LGHPAQHLLMWDQPEYPALLAEIDDAPPLLFVAGDPFILEKPQLAVVGSRRASRPGMDTAAAFSRSLASAGFVITSGLAL
GIDGAAHQAALDVGGQTIGVLGTGLENFYPQRHRRLAAAMIAQGSAVVSEFPLDAAPQAGNFPRRNRIISGLSLGVLVVE
ASMASGSLITARLAAEQGREVYAIPGSIHHPGAKGCHQLIRDGAVLVETIEHILEGLRGWQALSRPAPMPVTHPLVALLH
AAPHTSEALAIASGRPLPQLLATLTELELEGQVICESGRWLARC

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=437607 IM720_RS01295 WP_150055404.1 293210..294304(+) (dprA) [Pseudomonas fluorescens strain KF1]
ATGTTTCCGATAAACCGCAGTGAAATTTCCCCGTCCGAACTGGAAGCGCGACTGCGCTTGCACAGGCTGCCGGAACTGGG
TCCAAAGCGTTTTCGCCTATTGATCGAGGCATTCGGCTGCGCCTCGAAGGCGCTCAGCGCGCCCGCCAGTGCCTGGCGTT
CCCTGGGGTTGCCGGCCATCAGTGGCGATGCCCGGCGGAGCCACGAAGTCCGCGATGGTGCCAGTGCGGCATTGGCGTGG
CTGGGGCACCCGGCCCAGCATTTGCTGATGTGGGACCAACCTGAGTACCCCGCCCTGCTTGCCGAGATCGACGATGCACC
GCCGCTGTTATTCGTTGCTGGCGACCCTTTTATCCTGGAAAAACCACAGCTGGCCGTGGTCGGCAGCCGCCGCGCTTCGC
GCCCTGGGATGGACACTGCCGCCGCCTTTTCCCGCAGCCTGGCGAGCGCCGGTTTTGTCATCACCAGTGGCCTGGCCCTG
GGCATTGACGGTGCGGCGCATCAAGCGGCATTGGATGTTGGTGGGCAGACAATTGGCGTGCTGGGCACCGGGCTCGAAAA
CTTTTATCCACAGCGCCACCGACGGCTCGCGGCGGCGATGATTGCCCAGGGCAGTGCCGTGGTTTCCGAGTTTCCACTCG
ATGCCGCGCCCCAGGCCGGTAATTTCCCTCGGCGCAACCGCATTATCAGCGGCCTGTCCCTCGGTGTGCTGGTGGTGGAA
GCCAGCATGGCCAGCGGTTCGCTGATCACTGCACGGCTGGCGGCCGAACAAGGGCGCGAGGTGTATGCGATCCCGGGCTC
CATCCACCATCCCGGGGCCAAGGGGTGTCACCAGTTGATCCGCGATGGCGCGGTGCTGGTGGAAACCATCGAGCACATCC
TCGAAGGTTTGCGCGGCTGGCAGGCGTTGTCGCGCCCCGCGCCGATGCCGGTCACTCATCCGCTGGTGGCGTTGCTGCAT
GCGGCGCCCCACACCAGCGAAGCCTTGGCGATTGCCAGCGGGCGCCCCTTGCCCCAGCTACTGGCTACCCTGACCGAGCT
GGAGCTGGAAGGTCAGGTGATCTGTGAAAGTGGGCGCTGGCTCGCGCGCTGCTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(307-358)

DNA recombination-mediator protein A (DNA_processg_A)

(87-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.251

99.725

0.431
  dprA Acinetobacter baylyi ADP1

43.017

98.352

0.423
  dprA Legionella pneumophila strain ERS1305867

41.504

98.626

0.409
  dprA Glaesserella parasuis strain SC1401

42.059

93.407

0.393
  dprA Acinetobacter baumannii D1279779

39.886

96.429

0.385
  dprA Acinetobacter baumannii strain A118

39.601

96.429

0.382
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.92

96.703

0.376
  dprA Neisseria meningitidis strain C311

45.333

82.418

0.374
  dprA Neisseria meningitidis MC58

45.333

82.418

0.374
  dprA Neisseria gonorrhoeae MS11

44.667

82.418

0.368
  dprA Haemophilus influenzae Rd KW20

47.857

76.923

0.368
  dprA Neisseria gonorrhoeae strain FA1090

44.333

82.418

0.365