Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HGD77_RS14000 Genome accession   NZ_CP051208
Coordinates   2894178..2895407 (+) Length   409 a.a.
NCBI ID   WP_168730881.1    Uniprot ID   -
Organism   Acinetobacter sp. NEB149     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2889178..2900407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGD77_RS13955 (HGD77_13960) rimP 2889432..2889956 (-) 525 WP_004281103.1 ribosome maturation factor RimP -
  HGD77_RS13985 (HGD77_13990) secG 2891025..2891354 (-) 330 WP_004281101.1 preprotein translocase subunit SecG -
  HGD77_RS13990 (HGD77_13995) tpiA 2891368..2892159 (-) 792 WP_168730879.1 triose-phosphate isomerase -
  HGD77_RS13995 (HGD77_14000) pilB 2892437..2894146 (+) 1710 WP_168730880.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HGD77_RS14000 (HGD77_14005) pilC 2894178..2895407 (+) 1230 WP_168730881.1 type II secretion system F family protein Machinery gene
  HGD77_RS17175 (HGD77_14010) pilD 2895407..2896267 (+) 861 WP_168730882.1 prepilin peptidase Machinery gene
  HGD77_RS14010 (HGD77_14015) coaE 2896269..2896868 (+) 600 WP_168730883.1 dephospho-CoA kinase -
  HGD77_RS14015 (HGD77_14020) - 2896890..2897816 (-) 927 WP_168730884.1 DMT family transporter -
  HGD77_RS14020 (HGD77_14025) rlmB 2897816..2898568 (-) 753 WP_168730885.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  HGD77_RS14025 (HGD77_14030) - 2898705..2899028 (-) 324 WP_004281089.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44880.36 Da        Isoelectric Point: 9.8732

>NTDB_id=436955 HGD77_RS14000 WP_168730881.1 2894178..2895407(+) (pilC) [Acinetobacter sp. NEB149]
MAAVKKGQMMPIFSYEGIDRKGAKIKGELPAKNMALAKVTLRKQGISIKTIREKKKNILEGLMKKRVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPAAVVVVALIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIAIGALI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=436955 HGD77_RS14000 WP_168730881.1 2894178..2895407(+) (pilC) [Acinetobacter sp. NEB149]
ATGGCAGCAGTAAAGAAAGGCCAGATGATGCCGATCTTCAGCTATGAAGGAATTGATCGTAAGGGGGCAAAGATCAAGGG
GGAATTGCCAGCAAAAAATATGGCTTTGGCCAAGGTCACCCTGCGAAAACAAGGCATCAGCATCAAGACCATTCGGGAAA
AGAAAAAAAATATTCTCGAAGGCTTGATGAAAAAACGTGTTAGTACACTAGATATTACGATTTTTACCCGACAGTTGGCG
ACCATGATGAAAGCCGGTGTGCCACTGGTGCAAGGCTTTGAAATTGTCGCAGAAGGTCTGGAAAATCCAGCGATGCGTGA
AGTTGTACTGGGAATTAAAGGTGAAGTAGAAGGCGGTAATACCTTTGCCGGTGCACTGCGCAAATACCCACAATATTTCG
ACAACCTGTTCTGTTCACTGGTCGAATCTGGTGAACAATCCGGTGCGCTAGAAACCATGCTGGATCGGGTCGCAATCTAT
AAAGAAAAAAGCGAACTGCTCAAGCAAAAAATCAAAAAAGCCATGAAGTATCCGGCTGCGGTGGTTGTGGTCGCCCTGAT
TGTTACCATTATCTTGATGGTTAAAGTGGTACCGGTTTTCCAGGACTTATTCTCTTCATTTGGCGCCGACCTGCCTGCTT
TCACCAAAATGGTAGTCAATATGTCGGAATGGATGCAAAAATATTGGTTCCTGCTGATTATTGCCATTGGCGCTTTGATT
ACCGCTTTTCTTGAAGCCAAGAAACGTAGTAAAAAATTCCGTGATTTTCTGGATAAAGCCGCACTCAAGGCACCAATTTT
TGGTGATCTGGTATATAAAGCCATTATTGCACGTTATAGTCGCACTCTGGCCACGACTTTCGCAGCCGGTGTACCCTTGA
TTGATGCGCTGGAATCCACTGCCGGCGCTACCAATAACGTCGTGTATGAAGATGCCGTGATGAAAATCCGTGAAGATGTC
GCCACAGGTCAACAACTACAGTTTGCTATGCGAGTCACCAACAAATTCCCATCTATGGCAGTACAAATGGTCGCAATTGG
TGAAGAATCCGGTGCGTTAGATGCCATGCTAGATAAAGTTGCCACGCATTATGAAAACGAAGTGGATAATGCGGTAGATG
GCTTAACTTCAATGATGGAACCGCTCATTATGGCTGTTCTCGGTGTGCTTGTTGGTGGTCTGGTGATTGCTATGTACCTT
CCAATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.926

99.511

0.895
  pilC Acinetobacter baylyi ADP1

83.047

99.511

0.826
  pilC Pseudomonas stutzeri DSM 10701

62.312

97.311

0.606
  pilC Legionella pneumophila strain ERS1305867

53.652

97.066

0.521
  pilG Neisseria gonorrhoeae MS11

45.98

97.311

0.447
  pilG Neisseria meningitidis 44/76-A

45.98

97.311

0.447
  pilC Vibrio cholerae strain A1552

43.873

99.756

0.438
  pilC Vibrio campbellii strain DS40M4

42.317

97.066

0.411
  pilC Thermus thermophilus HB27

37.284

99.022

0.369