NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	HGD77_RS17175	Genome accession	NZ_CP051208
Coordinates	2895407..2896267 (+)	Length	286 a.a.
NCBI ID	WP_168730882.1	Uniprot ID	-
Organism	Acinetobacter sp. NEB149
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2890407..2901267

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGD77_RS13985 (HGD77_13990)	secG	2891025..2891354 (-)	330	WP_004281101.1	preprotein translocase subunit SecG	-
HGD77_RS13990 (HGD77_13995)	tpiA	2891368..2892159 (-)	792	WP_168730879.1	triose-phosphate isomerase	-
HGD77_RS13995 (HGD77_14000)	pilB	2892437..2894146 (+)	1710	WP_168730880.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HGD77_RS14000 (HGD77_14005)	pilC	2894178..2895407 (+)	1230	WP_168730881.1	type II secretion system F family protein	Machinery gene
HGD77_RS17175 (HGD77_14010)	pilD	2895407..2896267 (+)	861	WP_168730882.1	prepilin peptidase	Machinery gene
HGD77_RS14010 (HGD77_14015)	coaE	2896269..2896868 (+)	600	WP_168730883.1	dephospho-CoA kinase	-
HGD77_RS14015 (HGD77_14020)	-	2896890..2897816 (-)	927	WP_168730884.1	DMT family transporter	-
HGD77_RS14020 (HGD77_14025)	rlmB	2897816..2898568 (-)	753	WP_168730885.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
HGD77_RS14025 (HGD77_14030)	-	2898705..2899028 (-)	324	WP_004281089.1	pyrimidine/purine nucleoside phosphorylase	-
HGD77_RS14030 (HGD77_14035)	recN	2899471..2901132 (+)	1662	WP_168730886.1	DNA repair protein RecN	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32063.29 Da Isoelectric Point: 8.0564

                                >NTDB_id=436962 HGD77_RS17175 WP_168730882.1 2895407..2896267(+) (pilD) [Acinetobacter sp. NEB149]

MQDLIQYFIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQMFLHPEQPVIDEAKLSLSKPASTCPKCHQP

IRWYQNIPVISWLVLRGKCSNCQNSISIRYPFVEILTTVCALMVVAVFGPTAQMLFGLILTYVLIALTFIDFDTQLLPDR

YTLSLAALGLGVNSYALYTSPSSAIWGYIIGFLCLWVVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSL

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

Download Length: 861 bp

                                >NTDB_id=436962 HGD77_RS17175 WP_168730882.1 2895407..2896267(+) (pilD) [Acinetobacter sp. NEB149]

ATGCAAGATCTTATTCAATATTTTATTCAAAACCCAACGGCGTTGTATATCGCAGTTGGGCTTTTTAGTTTATGTATCGG

CAGCTTTCTGAATGTAGTGATTTATCGTACGCCCAAGATGATGGAACAGGAATGGCGTACCGATTGCCAGATGTTCCTGC

ATCCGGAACAGCCGGTGATTGATGAAGCGAAATTAAGTTTAAGCAAACCCGCTTCGACTTGCCCTAAATGTCATCAGCCA

ATCCGCTGGTACCAGAATATCCCAGTTATCAGCTGGCTGGTCCTGCGCGGGAAATGTAGCAACTGCCAGAATTCCATTAG

CATCCGCTATCCATTTGTTGAAATTCTGACGACAGTTTGTGCACTGATGGTCGTAGCAGTATTTGGTCCGACTGCACAAA

TGCTGTTTGGCCTGATTCTCACTTATGTGCTGATTGCGCTAACCTTTATCGATTTTGATACTCAGTTATTGCCTGACCGT

TATACACTGTCCTTGGCCGCGCTAGGTTTAGGGGTAAATAGTTATGCACTCTATACCTCACCAAGCTCTGCCATCTGGGG

CTATATCATTGGTTTTCTGTGTCTATGGGTGGTGTATTACCTGTTTAAAATAATCACCGGTAAAGAAGGCATGGGTTATG

GCGATTTTAAATTGCTAGCCGCTTTGGGTGCCTGGATGGGTCCATTATTACTGCCTTTAATTGTGCTGCTGTCTTCCCTG

GTAGGCGCGATAATTGGCATCATTCTGCTAAAAGTCCGTAAGGAAAATCAGCCTTTTGCTTTTGGTCCTTATATTGCAAT

TGCCGGTTGGATTGCTTTTCTTTGGGGTGAACAAATTATGAAAGTGTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	81.404	99.65	0.811
pilD	Acinetobacter baumannii D1279779	81.053	99.65	0.808
pilD	Vibrio cholerae strain A1552	53.008	93.007	0.493
pilD	Vibrio campbellii strain DS40M4	49.123	99.65	0.49
pilD	Neisseria gonorrhoeae MS11	45.936	98.951	0.455

Detailed information NTG0436962