Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HEP74_RS05260 Genome accession   NZ_CP051190
Coordinates   1248448..1249707 (-) Length   419 a.a.
NCBI ID   WP_185815507.1    Uniprot ID   -
Organism   Xanthomonas sp. SS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1243448..1254707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP74_RS21890 (HEP74_01032) - 1244207..1244665 (+) 459 WP_255424006.1 hypothetical protein -
  HEP74_RS05240 (HEP74_01033) - 1244680..1245357 (+) 678 WP_046978044.1 response regulator transcription factor -
  HEP74_RS05245 (HEP74_01034) - 1245350..1246696 (+) 1347 WP_185815505.1 HAMP domain-containing sensor histidine kinase -
  HEP74_RS05250 (HEP74_01035) coaE 1246944..1247564 (-) 621 WP_185815506.1 dephospho-CoA kinase -
  HEP74_RS05255 (HEP74_01036) - 1247578..1248441 (-) 864 WP_046978035.1 A24 family peptidase -
  HEP74_RS05260 (HEP74_01037) pilC 1248448..1249707 (-) 1260 WP_185815507.1 type II secretion system F family protein Machinery gene
  HEP74_RS05265 (HEP74_01038) pilA 1250093..1250500 (+) 408 WP_185815508.1 pilin Machinery gene
  HEP74_RS22015 - 1250589..1250999 (+) 411 WP_185815509.1 pilin -
  HEP74_RS05275 (HEP74_01039) pilB 1251037..1252776 (+) 1740 WP_185815510.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HEP74_RS05280 (HEP74_01040) pilR 1252931..1254319 (-) 1389 WP_185815511.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45821.04 Da        Isoelectric Point: 10.0958

>NTDB_id=436748 HEP74_RS05260 WP_185815507.1 1248448..1249707(-) (pilC) [Xanthomonas sp. SS]
MSATRSAVPKEPIARNTSQQVPFVWEGTDKRGIKMKGEQTARNANLLRAELRRQGITPSVVKPKPKPLFGSTGSKITPKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVDQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVAAYKENIEALKGKIKKALFYPAMVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWI
VLIILVGSIAGFIFSYKRSPSMQHGMDRLILKVPIIGQIMHNSSIARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
VVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=436748 HEP74_RS05260 WP_185815507.1 1248448..1249707(-) (pilC) [Xanthomonas sp. SS]
ATGTCCGCAACTCGTAGCGCAGTACCCAAAGAACCCATCGCGCGCAATACCAGCCAGCAGGTGCCGTTCGTCTGGGAGGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAGGAACGCCAATCTGTTGCGTGCCGAGTTGCGCCGCC
AAGGCATCACGCCTTCGGTGGTCAAGCCGAAGCCCAAACCTCTGTTCGGCTCTACTGGCAGCAAGATCACCCCCAAGGAC
ATTGCTTTCTTTAGTCGCCAGATGGCGACCATGATGAAGTCCGGCGTCCCCATCGTGGGATCGCTGGAGATCATCGGCAG
CGGGCATAAGAACCCCCGCATGAAAAAGATGGTGGATCAGGTCCGTACCGACATCGAAGGCGGCTCGTCGCTCTATGAGG
CGATCAGCAAGCACCCGGTCCAGTTCGATGAGCTCTATCGCAATTTGGTCAAGGCAGGCGAAGGTGCCGGTGTACTCGAA
ACAGTACTGGAGACGGTTGCGGCTTATAAGGAAAACATCGAAGCACTGAAGGGCAAGATCAAGAAAGCCTTGTTCTACCC
CGCCATGGTCATGGCAGTCGCCCTGCTGGTCAGTTCGATCCTGTTGGTGTGGGTAGTCCCGCAGTTCGAGGACGTATTCA
AGGGGTTTGGCGCGGAATTGCCGGCGTTCACCCAGATGATCGTGGCCGCGTCGCGGTTCATGGTCTCGTACTGGTGGATC
GTGCTGATCATCCTGGTTGGCAGCATCGCCGGCTTTATCTTCTCCTACAAGCGCTCGCCATCGATGCAGCACGGCATGGA
CCGGTTGATTCTGAAGGTACCGATCATCGGCCAGATCATGCACAACAGCTCGATTGCGCGCTTTTCGCGGACTCTAGGCG
TGACTTTCCGCGCCGGCGTCCCCCTGGTGGAGGCGCTAGACATCGTTGCCGGCGCCACTGGCAACAGCGTCTACGAGAAA
GTCGTGCTGCGCATGCGCGACGACGTGTCGGTGGGCTACCCCGTCAACGTGGCGATGAAGCAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAGGCCGGTGCACTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTACG
AGCAGGAAGTGAACAATGCGGTGGATGCGTTGAGCAGCCTGATCGAGCCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTGATCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

51.471

97.375

0.501
  pilC Pseudomonas stutzeri DSM 10701

53.03

94.511

0.501
  pilC Legionella pneumophila strain ERS1305867

51.485

96.42

0.496
  pilC Acinetobacter baumannii D1279779

50.98

97.375

0.496
  pilG Neisseria gonorrhoeae MS11

43.719

94.988

0.415
  pilG Neisseria meningitidis 44/76-A

43.108

95.227

0.411
  pilC Vibrio cholerae strain A1552

41.728

96.659

0.403
  pilC Vibrio campbellii strain DS40M4

41.206

94.988

0.391