Detailed information NTG0436751

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HEP74_RS05280
• Genome accession: NZ_CP051190
• Coordinates: 1252931..1254319 (-)
• Length: 462 a.a.
• NCBI ID: WP_185815511.1
• Uniprot ID: -
• Organism: Xanthomonas sp. SS
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1247931..1259319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HEP74_RS05260 (HEP74_01037)	pilC	1248448..1249707 (-)	1260	WP_185815507.1	type II secretion system F family protein	Machinery gene
HEP74_RS05265 (HEP74_01038)	pilA	1250093..1250500 (+)	408	WP_185815508.1	pilin	Machinery gene
HEP74_RS22015	-	1250589..1250999 (+)	411	WP_185815509.1	pilin	-
HEP74_RS05275 (HEP74_01039)	pilB	1251037..1252776 (+)	1740	WP_185815510.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HEP74_RS05280 (HEP74_01040)	pilR	1252931..1254319 (-)	1389	WP_185815511.1	sigma-54 dependent transcriptional regulator	Regulator
HEP74_RS05285 (HEP74_01041)	-	1254393..1256006 (-)	1614	WP_185815512.1	HAMP domain-containing sensor histidine kinase	-
HEP74_RS05290 (HEP74_01042)	sucC	1256306..1257469 (+)	1164	WP_179566646.1	ADP-forming succinate--CoA ligase subunit beta	-
HEP74_RS05295 (HEP74_01043)	sucD	1257643..1258515 (+)	873	WP_179566644.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49878.31 Da
• Isoelectric Point: 6.5828

>NTDB_id=436751 HEP74_RS05280 WP_185815511.1 1252931..1254319(-) (pilR) [Xanthomonas sp. SS]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVRHALELNNNERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRVTPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=436751 HEP74_RS05280 WP_185815511.1 1252931..1254319(-) (pilR) [Xanthomonas sp. SS]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAGCTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCCAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAATGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCGGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAGGCACGCGCTGGAGCTCAACAACAACGAACGCGCTGCGCCGCCGGCGCCGC
CGCCGGAGCAGGCCAGTCGCCTGCTCGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGGGTCGGCAAGGAACTGGTCGCGCGCACCATCCACGAACAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTCGAC
GAAGTGGCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCCCGGTCGGTGC
CTCGATCGAAGTGCCGACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCACGGCCGGGTCACTCCGCTGCTGTCGCCGTCGGCACTGGA
CGCGCTGAACCGCTACGCGTTCCCTGGCAACGTGCGCGAATTGGAGAACATCCTCGAACGCGCCCTGGCGATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAATAGCGCCCGCGCCGCGGCCGAAGCCGCTCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCCGCCCTGCCCTCCTACATCGAGCAACTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCGGCCCAGCTCGGCATCACGTTTCGTGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.309	99.351	0.619
pilR	Acinetobacter baumannii strain A118	46.868	100	0.47