Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HF888_RS16640 Genome accession   NZ_CP051183
Coordinates   2163333..2163581 (-) Length   82 a.a.
NCBI ID   WP_083771895.1    Uniprot ID   -
Organism   Bermanella marisrubri strain RED65     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2158333..2168581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF888_RS10030 (HF888_10030) - 2158837..2160864 (-) 2028 WP_007017191.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
  HF888_RS10035 (HF888_10035) - 2161004..2162023 (+) 1020 WP_007017192.1 AraC family transcriptional regulator -
  HF888_RS16640 (HF888_10070) comEA 2163333..2163581 (-) 249 WP_083771895.1 helix-hairpin-helix domain-containing protein Machinery gene
  HF888_RS10075 (HF888_10075) pyrF 2163727..2164425 (-) 699 WP_007017195.1 orotidine-5'-phosphate decarboxylase -
  HF888_RS10080 (HF888_10080) - 2164415..2165581 (-) 1167 WP_007017196.1 hypothetical protein -
  HF888_RS10085 (HF888_10085) - 2165592..2165873 (-) 282 WP_007017197.1 LapA family protein -
  HF888_RS10090 (HF888_10090) xni 2165902..2166693 (-) 792 WP_007017198.1 flap endonuclease Xni -
  HF888_RS10095 (HF888_10095) - 2166693..2168486 (-) 1794 WP_007017199.1 ABC transporter ATP-binding protein/permease -

Sequence

Protein


Download         Length: 82 a.a.        Molecular weight: 8988.89 Da        Isoelectric Point: 4.5007

>NTDB_id=436709 HF888_RS16640 WP_083771895.1 2163333..2163581(-) (comEA) [Bermanella marisrubri strain RED65]
MAEPGHQQGSEQAAQQIETIDINTASAEQLTQLDNIGPNKAQAIIDYRESNGPFKDLEDLQNVKGIGSTTIHKNRDRMLV
GQ

Nucleotide


Download         Length: 249 bp        

>NTDB_id=436709 HF888_RS16640 WP_083771895.1 2163333..2163581(-) (comEA) [Bermanella marisrubri strain RED65]
ATGGCTGAGCCTGGCCATCAGCAAGGTTCTGAACAGGCCGCTCAACAAATTGAAACGATAGACATCAATACGGCTTCGGC
CGAGCAATTAACACAACTGGATAATATAGGGCCCAATAAAGCTCAGGCGATTATCGATTACCGTGAGAGCAATGGGCCGT
TTAAAGATCTAGAAGATTTACAGAACGTCAAGGGGATTGGTTCGACAACAATCCACAAGAATCGTGATCGCATGCTTGTA
GGTCAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(16-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

56.164

89.024

0.5
  comEA Vibrio cholerae strain A1552

56.164

89.024

0.5
  comEA Vibrio parahaemolyticus RIMD 2210633

60.317

76.829

0.463
  comEA Streptococcus thermophilus LMD-9

39.506

98.78

0.39
  comE Neisseria gonorrhoeae MS11

44.928

84.146

0.378
  comE Neisseria gonorrhoeae MS11

44.928

84.146

0.378
  comE Neisseria gonorrhoeae MS11

44.928

84.146

0.378
  comE Neisseria gonorrhoeae MS11

44.928

84.146

0.378
  comEA Vibrio campbellii strain DS40M4

49.206

76.829

0.378
  comEA/celA/cilE Streptococcus mitis SK321

41.667

87.805

0.366
  comEA/comE1 Glaesserella parasuis strain SC1401

48.387

75.61

0.366
  comEA Acinetobacter baylyi ADP1

49.18

74.39

0.366