Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   HF313_RS07760 Genome accession   NZ_CP051166
Coordinates   1777314..1778534 (-) Length   406 a.a.
NCBI ID   WP_126074535.1    Uniprot ID   A0A430HM62
Organism   Massilia atriviolacea strain SOD     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1772314..1783534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF313_RS07735 (HF313_07745) yacG 1773412..1773597 (-) 186 WP_126074530.1 DNA gyrase inhibitor YacG -
  HF313_RS07740 (HF313_07750) zapD 1773611..1774366 (-) 756 WP_126074531.1 cell division protein ZapD -
  HF313_RS07745 (HF313_07755) coaE 1774446..1775078 (-) 633 WP_126074532.1 dephospho-CoA kinase -
  HF313_RS07750 (HF313_07760) pilD 1775080..1775970 (-) 891 WP_126074533.1 A24 family peptidase Machinery gene
  HF313_RS07755 (HF313_07765) - 1776157..1777248 (+) 1092 WP_126074534.1 acyltransferase -
  HF313_RS07760 (HF313_07770) pilG 1777314..1778534 (-) 1221 WP_126074535.1 type II secretion system F family protein Machinery gene
  HF313_RS07765 (HF313_07775) pilB 1778546..1780273 (-) 1728 WP_126074536.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HF313_RS07770 (HF313_07780) - 1780497..1781777 (-) 1281 WP_126074537.1 HlyC/CorC family transporter -
  HF313_RS07775 (HF313_07785) - 1781943..1782503 (-) 561 WP_126074538.1 ATP-dependent Clp protease proteolytic subunit -
  HF313_RS07780 (HF313_07790) uraH 1782571..1782924 (-) 354 WP_126074539.1 hydroxyisourate hydrolase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44360.47 Da        Isoelectric Point: 10.0418

>NTDB_id=436482 HF313_RS07760 WP_126074535.1 1777314..1778534(-) (pilG) [Massilia atriviolacea strain SOD]
MALAQTKTATKESVYAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGVMVTKVKKKRYRSGKKITDKDISLFTRQLATMM
KAGVPLLQSFDIVGKGHSNPSMSKLIMELRGDIETGTSLNNAFRKYPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYKEK
TLAIKAKIKSAMIYPVSILGVAFLVTAVIMIWVVPAFKQVFESFGANLPTPTMIVMDISDFFVEYWWAIFGSLFAGLYFF
FQSWRRSLKMQRFMDLTLLKAPIFGPVIRKAAIARWTRTLATMFAAGVPLVEALDSVGGAAGNALYLEATKKIQNEVSTG
TSLTVAMQNANVFPPIVTQMVAIGEESGALDSMLGKVAGFFEDEVDEAVASLASLMEPLIMVILGVIIGGLVVAMYLPIF
KLGAVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=436482 HF313_RS07760 WP_126074535.1 1777314..1778534(-) (pilG) [Massilia atriviolacea strain SOD]
ATGGCACTCGCTCAAACCAAAACCGCCACCAAGGAGTCGGTCTATGCCTGGGAAGGCAAGGACAAGACTGGCAAGACCGT
GCGCGGCGAACTGCGTGCCGGGGGCGAAGCCGTCGTCAACGTGACCCTGCGGCGCCAGGGCGTGATGGTGACCAAGGTCA
AGAAAAAACGCTATCGCAGCGGTAAGAAAATCACCGACAAGGATATTTCCCTGTTCACGCGCCAGCTGGCCACGATGATG
AAGGCCGGCGTGCCGCTGCTGCAATCGTTCGACATCGTCGGCAAGGGTCACTCGAATCCCTCGATGTCCAAGCTGATCAT
GGAACTGCGCGGCGATATCGAAACCGGTACCAGCCTGAACAACGCTTTCCGCAAGTATCCGCTCTACTTCGACCCGCTGT
TCTGCAACCTGGTCGGCGCCGGCGAACAGGCCGGTATCCTGGAAGACTTGCTCACGCGCCTGGCGATCTACAAGGAAAAG
ACCCTGGCCATCAAGGCCAAGATCAAGTCGGCCATGATTTATCCGGTCTCGATCCTGGGCGTGGCCTTCCTGGTCACGGC
CGTCATCATGATCTGGGTGGTGCCGGCGTTCAAGCAGGTGTTCGAAAGCTTCGGCGCCAACCTGCCGACGCCGACCATGA
TCGTGATGGACATTTCGGACTTCTTCGTCGAATACTGGTGGGCGATTTTCGGCTCCCTGTTCGCCGGCCTGTACTTCTTC
TTCCAGTCCTGGCGCCGTTCGCTCAAGATGCAGCGCTTCATGGACCTGACCCTGCTCAAGGCACCGATCTTCGGCCCCGT
GATCCGCAAGGCGGCGATCGCGCGCTGGACCCGCACCCTGGCCACCATGTTCGCGGCCGGCGTGCCGCTGGTCGAAGCGC
TCGACTCGGTCGGCGGCGCGGCCGGCAACGCCCTGTACCTGGAAGCGACCAAGAAGATCCAGAACGAGGTCAGCACCGGT
ACCAGCCTGACCGTGGCGATGCAAAATGCCAACGTGTTCCCGCCGATCGTCACCCAGATGGTGGCCATCGGTGAAGAATC
GGGTGCGCTCGATTCGATGCTGGGCAAGGTCGCCGGCTTCTTCGAAGACGAGGTCGACGAGGCGGTCGCTTCGCTGGCCT
CGCTGATGGAACCGCTGATCATGGTGATCCTGGGCGTGATCATCGGCGGCCTGGTGGTTGCCATGTACCTGCCGATCTTC
AAACTGGGCGCGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A430HM62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

52.381

98.276

0.515
  pilC Pseudomonas stutzeri DSM 10701

51.861

99.261

0.515
  pilC Acinetobacter baumannii D1279779

51.358

99.754

0.512
  pilG Neisseria meningitidis 44/76-A

51.88

98.276

0.51
  pilC Legionella pneumophila strain ERS1305867

52.02

97.537

0.507
  pilC Acinetobacter baylyi ADP1

50

98.03

0.49
  pilC Vibrio cholerae strain A1552

40

98.522

0.394
  pilC Vibrio campbellii strain DS40M4

39.043

97.783

0.382
  pilC Thermus thermophilus HB27

37.845

98.276

0.372