NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	HF313_RS07750	Genome accession	NZ_CP051166
Coordinates	1775080..1775970 (-)	Length	296 a.a.
NCBI ID	WP_126074533.1	Uniprot ID	A0A430HM41
Organism	Massilia atriviolacea strain SOD
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1770080..1780970

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF313_RS07720 (HF313_07730)	-	1770468..1770878 (+)	411	WP_126074527.1	NUDIX domain-containing protein	-
HF313_RS07725 (HF313_07735)	-	1770930..1772186 (+)	1257	WP_126074528.1	D-amino acid dehydrogenase	-
HF313_RS07730 (HF313_07740)	-	1772194..1773321 (-)	1128	WP_126074529.1	sensor histidine kinase KdpD	-
HF313_RS07735 (HF313_07745)	yacG	1773412..1773597 (-)	186	WP_126074530.1	DNA gyrase inhibitor YacG	-
HF313_RS07740 (HF313_07750)	zapD	1773611..1774366 (-)	756	WP_126074531.1	cell division protein ZapD	-
HF313_RS07745 (HF313_07755)	coaE	1774446..1775078 (-)	633	WP_126074532.1	dephospho-CoA kinase	-
HF313_RS07750 (HF313_07760)	pilD	1775080..1775970 (-)	891	WP_126074533.1	A24 family peptidase	Machinery gene
HF313_RS07755 (HF313_07765)	-	1776157..1777248 (+)	1092	WP_126074534.1	acyltransferase	-
HF313_RS07760 (HF313_07770)	pilG	1777314..1778534 (-)	1221	WP_126074535.1	type II secretion system F family protein	Machinery gene
HF313_RS07765 (HF313_07775)	pilB	1778546..1780273 (-)	1728	WP_126074536.1	type IV-A pilus assembly ATPase PilB	Machinery gene

Sequence

Protein

Download Length: 296 a.a. Molecular weight: 31667.58 Da Isoelectric Point: 7.8942

                                >NTDB_id=436481 HF313_RS07750 WP_126074533.1 1775080..1775970(-) (pilD) [Massilia atriviolacea strain SOD]

MLESFLFAVPGSLGPALVAGLFGLLVGSFLNVVIYRLPKMMERDYNDYLAGEYGCGCGTRQVHTDTFNLAVPRSACPHCG

HRIGALENIPVISYLVLGGKCKGCKAKISPRYPIIELASGLLSALLIWTFGSGYAGLATLVFLYLLIAMTFIDADTQLLP

DELTYPLLWIGLLLNINGSFVPLQDAVIGAVAGYLVLWSVATLYEKLRGQVGMGHGDFKLLAALGAWMGWSMLPSIILIS

SAVGSVVGICLIVFGGRERNVKIPFGPYLAAAGLIALVYGKQIAGVTDVVVKHWVQ

Nucleotide

Download Length: 891 bp

                                >NTDB_id=436481 HF313_RS07750 WP_126074533.1 1775080..1775970(-) (pilD) [Massilia atriviolacea strain SOD]

ATGCTGGAATCCTTCTTGTTCGCCGTCCCCGGTTCCCTGGGACCGGCCCTCGTCGCCGGCCTGTTCGGCCTGCTGGTCGG

CAGCTTCCTGAATGTCGTCATCTACCGCCTCCCGAAGATGATGGAGCGCGACTATAACGACTACCTGGCCGGCGAGTACG

GCTGCGGCTGCGGCACCCGCCAGGTGCACACCGACACCTTTAACCTGGCGGTGCCGCGCTCGGCCTGCCCCCATTGCGGG

CACCGGATCGGCGCGCTGGAAAACATCCCGGTGATCAGCTACCTGGTCCTGGGCGGCAAGTGCAAAGGCTGCAAGGCCAA

AATTTCTCCCCGGTATCCGATCATCGAACTGGCCAGCGGCCTGCTGTCGGCCCTGCTGATCTGGACCTTCGGCAGCGGCT

ACGCCGGGCTGGCGACCCTGGTCTTCCTCTACCTGCTGATCGCGATGACCTTCATCGACGCCGACACCCAGCTGCTGCCC

GACGAGCTGACCTATCCGCTGCTGTGGATCGGCCTCCTGCTCAATATTAACGGCAGCTTCGTGCCGCTGCAGGACGCCGT

CATCGGCGCCGTGGCCGGCTATCTGGTGCTGTGGTCGGTGGCAACCTTGTACGAAAAGCTGCGCGGCCAGGTCGGCATGG

GCCACGGCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGATGGGCTGGAGCATGCTGCCGAGCATCATCCTGATCTCG

TCGGCGGTCGGTTCGGTGGTCGGCATCTGCCTGATCGTGTTCGGCGGGCGCGAGCGCAATGTGAAGATTCCCTTCGGCCC

TTACCTGGCGGCGGCCGGCCTGATCGCCCTGGTCTACGGCAAGCAGATCGCCGGCGTGACCGACGTCGTCGTCAAGCACT

GGGTCCAGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-130)

Type IV leader peptidase family (Peptidase_A24)

(140-249)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A430HM41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	51.237	95.608	0.49
pilD	Vibrio campbellii strain DS40M4	51.673	90.878	0.47
pilD	Neisseria gonorrhoeae MS11	47.735	96.959	0.463
pilD	Acinetobacter baumannii D1279779	45.956	91.892	0.422
pilD	Acinetobacter nosocomialis M2	45.221	91.892	0.416

Detailed information NTG0436481