Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HC167_RS02270 Genome accession   NZ_CP050790
Coordinates   466552..467793 (-) Length   413 a.a.
NCBI ID   WP_182787461.1    Uniprot ID   -
Organism   Aeromonas media strain FiBL-2097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 461552..472793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC167_RS02245 (HC167_02240) mutT 463522..463926 (+) 405 WP_005332118.1 8-oxo-dGTP diphosphatase MutT -
  HC167_RS02250 (HC167_02245) yacG 464002..464196 (-) 195 WP_042649030.1 DNA gyrase inhibitor YacG -
  HC167_RS02255 (HC167_02250) zapD 464206..464928 (-) 723 WP_404834478.1 cell division protein ZapD -
  HC167_RS02260 (HC167_02255) coaE 464966..465580 (-) 615 WP_182787457.1 dephospho-CoA kinase -
  HC167_RS02265 (HC167_02260) pilD 465599..466471 (-) 873 WP_182787459.1 A24 family peptidase Machinery gene
  HC167_RS02270 (HC167_02265) pilC 466552..467793 (-) 1242 WP_182787461.1 type II secretion system F family protein Machinery gene
  HC167_RS02275 (HC167_02270) pilB 467923..469629 (-) 1707 WP_182787463.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  HC167_RS02280 (HC167_02275) tapA 469633..470070 (-) 438 WP_182788811.1 type IVa pilus major pilin TapA -
  HC167_RS02285 (HC167_02280) nadC 470395..471258 (-) 864 WP_182787465.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HC167_RS02290 (HC167_02285) - 471262..471723 (-) 462 WP_371316622.1 TIGR02281 family clan AA aspartic protease -
  HC167_RS02295 (HC167_02290) ampD 471869..472441 (+) 573 WP_182787467.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45505.58 Da        Isoelectric Point: 10.1464

>NTDB_id=434777 HC167_RS02270 WP_182787461.1 466552..467793(-) (pilC) [Aeromonas media strain FiBL-2097]
MATLAQKRNTPKKVFSFRWHGFNRKGQKVSGEFQADSINTVKAELRKQGVNVTKVSKQGQGLFSKGGARIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIATDVETGTPLSEALRRHPRHFDALYCDLVDAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIIVTSILLLFVIPQFEEIFKSFGAELPVFTRFVIGISRFMQAWWYIIFGGAA
LAIFLYVRAWRKSQKVRDNTDRFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAILAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=434777 HC167_RS02270 WP_182787461.1 466552..467793(-) (pilC) [Aeromonas media strain FiBL-2097]
ATGGCAACATTAGCGCAAAAACGTAACACACCCAAAAAGGTCTTCTCCTTCCGCTGGCATGGATTCAATCGCAAGGGACA
AAAGGTTTCCGGTGAGTTCCAGGCCGACAGCATCAACACCGTCAAGGCGGAACTGCGCAAGCAGGGCGTCAATGTCACCA
AGGTCAGCAAGCAGGGCCAGGGCCTGTTTTCCAAGGGTGGTGCCCGGATCAAACCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCGGCCGGTGTGCCGCTGGTGCAAAGCCTGCAGATCATCGCCCGCGGTCATGAGAAGGCAGC
AGTACGCGAACTCATCGGCCAGATCGCCACCGATGTGGAAACCGGCACCCCGCTGTCAGAGGCGCTGCGCCGCCACCCCC
GCCACTTCGATGCGCTTTACTGCGACCTGGTAGACGCGGGGGAGCAGTCTGGCGCGCTGGAAACCATCTACGACCGGATT
GCCACATACCGCGAGAAGAGTGAGGCGCTGAAGTCCAAGATCAAGAAGGCCATGTTCTATCCCGCCATGGTCATCCTGGT
CGCCATCATCGTAACCTCCATCCTGCTGCTGTTCGTCATTCCCCAGTTCGAGGAGATCTTCAAGAGCTTCGGAGCAGAGC
TGCCAGTCTTCACCCGATTCGTCATCGGCATCTCCCGCTTCATGCAAGCTTGGTGGTATATCATTTTTGGTGGCGCAGCC
TTGGCCATCTTCCTCTATGTGCGCGCCTGGCGAAAATCCCAGAAGGTACGGGACAACACGGACAGATTCATCCTCACCAT
TCCGGTCGTGGGCAACATATTGCACAAGGCGGCCATGGCCCGTTTCGCCCGTACCCTCTCCACCACCTTCTCCGCCGGGA
TACCTCTGGTGGATGCCTTGGTGTCAGCGGCCGGCGCCTCTGGCAACTATGTCTATCGCACGGCCATCCTGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTCGCCATGCGTACCGTGGATCTCTTCCCAGACATGGTGATCCAGATGGT
GATGATAGGTGAGGAGTCCGGTGCCATCGATGACATGCTCTCCAAGGTCGCCGCCATCTTCGAGCAGGAGGTGGACGACA
TGGTCGATGGCCTCACCAGCCTGCTGGAGCCCATCATCATGGTGGTACTCGGGGTGCTGGTCGGTGGCATGGTTGTCGCC
ATGTACCTCCCCATCTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.818

95.884

0.545
  pilC Legionella pneumophila strain ERS1305867

53.086

98.063

0.521
  pilC Acinetobacter baumannii D1279779

51.122

97.094

0.496
  pilC Acinetobacter baylyi ADP1

51.378

96.61

0.496
  pilC Vibrio cholerae strain A1552

48.25

96.852

0.467
  pilC Vibrio campbellii strain DS40M4

46.482

96.368

0.448
  pilG Neisseria gonorrhoeae MS11

40.05

97.337

0.39
  pilG Neisseria meningitidis 44/76-A

39.801

97.337

0.387
  pilC Thermus thermophilus HB27

39.25

96.852

0.38