Detailed information NTG0434776

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HC167_RS02265
• Genome accession: NZ_CP050790
• Coordinates: 465599..466471 (-)
• Length: 290 a.a.
• NCBI ID: WP_182787459.1
• Uniprot ID: -
• Organism: Aeromonas media strain FiBL-2097
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 460599..471471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HC167_RS02240 (HC167_02235)	secA	460646..463366 (+)	2721	WP_042649031.1	preprotein translocase subunit SecA	-
HC167_RS02245 (HC167_02240)	mutT	463522..463926 (+)	405	WP_005332118.1	8-oxo-dGTP diphosphatase MutT	-
HC167_RS02250 (HC167_02245)	yacG	464002..464196 (-)	195	WP_042649030.1	DNA gyrase inhibitor YacG	-
HC167_RS02255 (HC167_02250)	zapD	464206..464928 (-)	723	WP_404834478.1	cell division protein ZapD	-
HC167_RS02260 (HC167_02255)	coaE	464966..465580 (-)	615	WP_182787457.1	dephospho-CoA kinase	-
HC167_RS02265 (HC167_02260)	pilD	465599..466471 (-)	873	WP_182787459.1	A24 family peptidase	Machinery gene
HC167_RS02270 (HC167_02265)	pilC	466552..467793 (-)	1242	WP_182787461.1	type II secretion system F family protein	Machinery gene
HC167_RS02275 (HC167_02270)	pilB	467923..469629 (-)	1707	WP_182787463.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
HC167_RS02280 (HC167_02275)	tapA	469633..470070 (-)	438	WP_182788811.1	type IVa pilus major pilin TapA	-
HC167_RS02285 (HC167_02280)	nadC	470395..471258 (-)	864	WP_182787465.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32024.27 Da
• Isoelectric Point: 7.0918

>NTDB_id=434776 HC167_RS02265 WP_182787459.1 465599..466471(-) (pilD) [Aeromonas media strain FiBL-2097]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMLEREWHADYRDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
ISALENIPLLSWLWLKGRCRQCKAPISARYPLVELLTALLSVTVAATLTPGWGALAALALTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGHGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGVGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

• Length: 873 bp

>NTDB_id=434776 HC167_RS02265 WP_182787459.1 465599..466471(-) (pilD) [Aeromonas media strain FiBL-2097]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGATTTTTCTCTTCTCCCTGATGGTTGG
CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCATGCAGACTACCGTGATTACTTCG
GCAGCGAGGTTGCCACTTCCCCCGCCGAACCTTACAACCTGATGGTGCCGCGCTCTCGCTGCCCCCACTGCGATCACCCC
ATAAGCGCGCTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGACGTTGCCGACAATGCAAGGCGCCAATTTC
GGCCCGCTATCCCCTGGTTGAGCTGCTGACCGCCCTGTTGTCGGTCACCGTTGCGGCGACCCTCACTCCCGGCTGGGGAG
CCCTGGCAGCCCTCGCACTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTCACCCTGCCGCTGCTGTGGGGCGGTCTGTTGTTCAATTTGGCAGGCGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCGTTCAAGCTGCTGACCGGAAAGGAGGGGATGGGTCATG
GCGACTTCAAGCTGCTGGCTGCACTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCGTCACTG
GTCGGCGCCATCATCGGGGTCGGGCTTATCCTGCTGCGTAACCATCATCAGGGCAAACCCATCCCCTTTGGTCCCTATCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.754	98.276	0.607
pilD	Vibrio campbellii strain DS40M4	56.401	99.655	0.562
pilD	Acinetobacter nosocomialis M2	51.799	95.862	0.497
pilD	Acinetobacter baumannii D1279779	51.439	95.862	0.493
pilD	Neisseria gonorrhoeae MS11	49.615	89.655	0.445