Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HC170_RS19540 Genome accession   NZ_CP050786
Coordinates   4173855..4175096 (+) Length   413 a.a.
NCBI ID   WP_042649026.1    Uniprot ID   A0AAE7ADJ1
Organism   Aeromonas media strain DSM 4881     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4168855..4180096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC170_RS19515 (HC170_19390) - 4169757..4170665 (-) 909 WP_404840787.1 RNA-guided endonuclease TnpB family protein -
  HC170_RS19520 - 4170646..4170897 (-) 252 WP_404840788.1 helix-turn-helix domain-containing protein -
  HC170_RS19525 (HC170_19395) tnpA 4170956..4171381 (+) 426 WP_041205574.1 IS200/IS605-like element ISAeme8 family transposase -
  HC170_RS19530 (HC170_19400) - 4171554..4172015 (+) 462 WP_082030008.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HC170_RS19535 (HC170_19405) pilB 4172019..4173725 (+) 1707 WP_042649025.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  HC170_RS19540 (HC170_19410) pilC 4173855..4175096 (+) 1242 WP_042649026.1 type II secretion system F family protein Machinery gene
  HC170_RS19545 (HC170_19415) pilD 4175177..4176049 (+) 873 WP_042649027.1 A24 family peptidase Machinery gene
  HC170_RS19550 (HC170_19420) coaE 4176068..4176682 (+) 615 WP_042649028.1 dephospho-CoA kinase -
  HC170_RS19555 (HC170_19425) zapD 4176720..4177442 (+) 723 WP_042649029.1 cell division protein ZapD -
  HC170_RS19560 (HC170_19430) yacG 4177452..4177646 (+) 195 WP_042649030.1 DNA gyrase inhibitor YacG -
  HC170_RS19565 (HC170_19435) mutT 4177722..4178126 (-) 405 WP_005332118.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45507.55 Da        Isoelectric Point: 10.0692

>NTDB_id=434711 HC170_RS19540 WP_042649026.1 4173855..4175096(+) (pilC) [Aeromonas media strain DSM 4881]
MATLAQKRNTPKKVFSFRWHGFNRKGQKVSGEFQADSINTVKAELRKQGVNVTKVSKQGQGLFSKGGARIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIATDVETGTPLSEALRRHPRHFDALYCDLVDAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIIVTSILLLFVIPQFEEIFKSFGAELPVFTQFVIGISRFMQAWWYIIFGGTA
LAIFLYVRAWRKSQKVRDNTDRFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAILAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=434711 HC170_RS19540 WP_042649026.1 4173855..4175096(+) (pilC) [Aeromonas media strain DSM 4881]
ATGGCAACATTAGCGCAAAAACGTAACACACCTAAAAAGGTCTTCTCCTTCCGCTGGCATGGATTCAATCGCAAGGGACA
AAAGGTTTCCGGTGAGTTCCAGGCCGACAGCATCAACACCGTCAAGGCGGAGCTGCGCAAGCAGGGCGTCAATGTCACCA
AGGTCAGCAAGCAGGGCCAGGGCCTGTTTTCCAAGGGGGGTGCTCGGATCAAGCCGATGGACATCGCCGTCATCTCCCGT
CAGATCACCACCATGCTCTCGGCCGGTGTGCCGCTGGTGCAAAGCTTGCAGATCATCGCCCGCGGTCATGAGAAGGCAGC
AGTACGCGAACTCATCGGCCAGATCGCCACCGATGTGGAAACCGGCACCCCGCTGTCAGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGCGCTCTACTGCGACCTGGTAGACGCGGGGGAGCAGTCCGGCGCGCTGGAAACCATCTACGACCGGATT
GCCACATACCGCGAGAAGAGTGAGGCGCTGAAGTCCAAGATCAAGAAAGCCATGTTCTATCCCGCCATGGTCATCCTGGT
CGCCATCATCGTAACCTCCATCCTGCTGCTGTTCGTCATTCCCCAGTTCGAGGAGATCTTCAAGAGCTTCGGGGCAGAGC
TGCCAGTCTTCACCCAATTCGTCATCGGTATCTCCCGCTTCATGCAAGCTTGGTGGTATATCATCTTTGGTGGCACTGCC
TTGGCCATCTTCCTCTATGTGCGCGCCTGGCGAAAATCCCAGAAGGTGCGGGACAACACCGACAGATTCATCCTCACCAT
TCCTGTCGTGGGCAACATATTGCACAAGGCGGCCATGGCCCGCTTCGCCCGTACCCTCTCCACCACCTTCTCCGCCGGGA
TACCTCTGGTGGATGCCCTGGTGTCAGCGGCCGGCGCCTCTGGCAACTATGTCTATCGCACGGCCATCCTGGCCATTCGC
AACGAAGTGGTGGCCGGCATGCAGATCAACGTCGCCATGCGTACCGTGGATCTCTTCCCAGACATGGTGATCCAGATGGT
GATGATTGGTGAAGAGTCAGGCGCCATCGATGACATGCTCTCCAAGGTTGCCGCCATCTTCGAGCAGGAGGTGGACGACA
TGGTCGATGGCCTCACCAGCCTGCTCGAACCCATCATCATGGTGGTGCTCGGGGTGCTGGTCGGTGGCATGGTCGTCGCC
ATGTACCTCCCCATCTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.818

95.884

0.545
  pilC Legionella pneumophila strain ERS1305867

52.84

98.063

0.518
  pilC Acinetobacter baumannii D1279779

51.372

97.094

0.499
  pilC Acinetobacter baylyi ADP1

50.882

96.126

0.489
  pilC Vibrio cholerae strain A1552

48.25

96.852

0.467
  pilC Vibrio campbellii strain DS40M4

46.734

96.368

0.45
  pilG Neisseria gonorrhoeae MS11

40.299

97.337

0.392
  pilG Neisseria meningitidis 44/76-A

40.05

97.337

0.39
  pilC Thermus thermophilus HB27

38.75

96.852

0.375