Detailed information NTG0434712

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HC170_RS19545
• Genome accession: NZ_CP050786
• Coordinates: 4175177..4176049 (+)
• Length: 290 a.a.
• NCBI ID: WP_042649027.1
• Uniprot ID: -
• Organism: Aeromonas media strain DSM 4881
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4170177..4181049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HC170_RS19520	-	4170646..4170897 (-)	252	WP_404840788.1	helix-turn-helix domain-containing protein	-
HC170_RS19525 (HC170_19395)	tnpA	4170956..4171381 (+)	426	WP_041205574.1	IS200/IS605-like element ISAeme8 family transposase	-
HC170_RS19530 (HC170_19400)	-	4171554..4172015 (+)	462	WP_082030008.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HC170_RS19535 (HC170_19405)	pilB	4172019..4173725 (+)	1707	WP_042649025.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
HC170_RS19540 (HC170_19410)	pilC	4173855..4175096 (+)	1242	WP_042649026.1	type II secretion system F family protein	Machinery gene
HC170_RS19545 (HC170_19415)	pilD	4175177..4176049 (+)	873	WP_042649027.1	A24 family peptidase	Machinery gene
HC170_RS19550 (HC170_19420)	coaE	4176068..4176682 (+)	615	WP_042649028.1	dephospho-CoA kinase	-
HC170_RS19555 (HC170_19425)	zapD	4176720..4177442 (+)	723	WP_042649029.1	cell division protein ZapD	-
HC170_RS19560 (HC170_19430)	yacG	4177452..4177646 (+)	195	WP_042649030.1	DNA gyrase inhibitor YacG	-
HC170_RS19565 (HC170_19435)	mutT	4177722..4178126 (-)	405	WP_005332118.1	8-oxo-dGTP diphosphatase MutT	-
HC170_RS19570 (HC170_19440)	secA	4178282..4181002 (-)	2721	WP_042649031.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32052.32 Da
• Isoelectric Point: 7.0918

>NTDB_id=434712 HC170_RS19545 WP_042649027.1 4175177..4176049(+) (pilD) [Aeromonas media strain DSM 4881]
MVPLIELAQGLPWLYLSLIFLFSLMIGSFLNVVIHRLPIMLEREWHADYRDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
ISALENIPLLSWLWLKGRCRQCKAPISARYPLVELLTALLSVTVAATLTPGWGALAALALTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGHGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

• Length: 873 bp

>NTDB_id=434712 HC170_RS19545 WP_042649027.1 4175177..4176049(+) (pilD) [Aeromonas media strain DSM 4881]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGATTTTTCTCTTCTCCCTGATGATTGG
CAGCTTCCTTAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCATGCAGACTACCGTGATTACTTCG
GCAGCGAGGTTGCCACTTCCCCCGCCGAACCTTACAACCTGATGGTACCGCGCTCTCGCTGCCCCCACTGCGATCACCCC
ATAAGCGCGCTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGACGTTGCCGACAATGCAAGGCGCCAATTTC
GGCCCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCACCGTTGCGGCGACCCTCACTCCCGGCTGGGGAG
CCCTGGCAGCCCTCGCACTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTCACACTGCCGCTGCTGTGGGGCGGTCTGTTGTTCAATCTGGCAGGCGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCTGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGTCATG
GCGACTTCAAGCTGCTGGCGGCACTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCTTCACTG
GTCGGCGCCATCATCGGGATCGGACTTATCCTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTATCT
CGCCATCGCGGGCTGGATAGCACTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.404	98.276	0.603
pilD	Vibrio campbellii strain DS40M4	56.055	99.655	0.559
pilD	Acinetobacter nosocomialis M2	52.518	95.862	0.503
pilD	Acinetobacter baumannii D1279779	52.158	95.862	0.5
pilD	Neisseria gonorrhoeae MS11	49.049	90.69	0.445