Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KU884_RS14360 Genome accession   NZ_CP050695
Coordinates   3039935..3041161 (+) Length   408 a.a.
NCBI ID   WP_167783269.1    Uniprot ID   -
Organism   Aquisalimonas sp. 2447     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3034935..3046161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU884_RS14345 (HC341_14280) - 3035086..3035868 (+) 783 WP_167783266.1 3-hydroxybutyrate dehydrogenase -
  KU884_RS14350 (HC341_14285) - 3035931..3037910 (+) 1980 WP_167783267.1 acetoacetate--CoA ligase -
  KU884_RS14355 (HC341_14290) pilB 3038205..3039929 (+) 1725 WP_167783268.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KU884_RS14360 (HC341_14295) pilC 3039935..3041161 (+) 1227 WP_167783269.1 type II secretion system F family protein Machinery gene
  KU884_RS14365 (HC341_14300) pilD 3041180..3042052 (+) 873 WP_167783270.1 A24 family peptidase Machinery gene
  KU884_RS14370 (HC341_14305) coaE 3042128..3042766 (+) 639 WP_167783271.1 dephospho-CoA kinase -
  KU884_RS14375 (HC341_14310) zapD 3042766..3043557 (+) 792 WP_167783272.1 cell division protein ZapD -
  KU884_RS14380 (HC341_14315) - 3043568..3043780 (+) 213 WP_167783273.1 DNA gyrase inhibitor YacG -
  KU884_RS14385 (HC341_14320) - 3043899..3044828 (-) 930 WP_167783274.1 Nudix family hydrolase -
  KU884_RS14390 (HC341_14325) argJ 3044839..3046050 (-) 1212 WP_167783275.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44795.51 Da        Isoelectric Point: 9.1885

>NTDB_id=434046 KU884_RS14360 WP_167783269.1 3039935..3041161(+) (pilC) [Aquisalimonas sp. 2447]
MAQKAAKQQPTFTWEGVDKRGERVKGENKASNVTMMKAELRRLGIQPKTVRKKSALSSLGQRKKKIEAGDIAVFSRQLAT
MMGAGVPLVQGLDIMAQGHQNPSMRELIQNIKTDVEGGTNLSETLRKHPRHFGDLFCNLVEAGESAGVLDTLLDKLATYL
EKTESIKKKIRKAMFYPSAVIAVAFIVTAILLIFVVPEFQNMFQSFGADLPVFTQFVINLSDLFQNYWYIIFGGIIAAVV
AFVAVHRRSPKFRRFLDRVLLKLPIVGPILDKAATARFGRTLSTMFAAGVPLVEALESVSGACGSTVYEDAIMEMKDQVA
SGQQLNVAMRLSNLFPHMVVQMAAIGEESGSLDTMLAKVADFYEEEVDNQIDSLSSLLEPLIMAVLGVLVGGLVIAMYLP
IFQMGQVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=434046 KU884_RS14360 WP_167783269.1 3039935..3041161(+) (pilC) [Aquisalimonas sp. 2447]
ATGGCACAGAAAGCCGCAAAACAGCAGCCGACGTTCACCTGGGAAGGTGTCGACAAGCGCGGCGAGCGGGTCAAGGGGGA
GAACAAGGCCTCTAACGTCACCATGATGAAGGCGGAACTGCGCCGCCTGGGCATCCAGCCCAAGACCGTACGCAAGAAGT
CGGCGCTGTCCAGCCTGGGCCAGCGCAAAAAGAAGATCGAGGCCGGCGACATTGCCGTCTTCAGCCGCCAGCTCGCCACC
ATGATGGGCGCCGGGGTGCCGCTGGTACAGGGCCTGGACATCATGGCCCAGGGGCATCAGAACCCCTCCATGCGCGAGCT
GATACAGAACATCAAAACCGACGTTGAGGGCGGTACGAACCTCAGCGAGACGCTGCGCAAGCACCCGCGCCACTTTGGCG
ATCTCTTCTGCAATCTTGTGGAGGCCGGCGAATCCGCCGGTGTTCTGGACACCCTGCTGGACAAGCTCGCCACCTATCTG
GAAAAGACGGAATCCATCAAGAAAAAGATCCGCAAGGCGATGTTCTACCCATCCGCGGTCATCGCGGTGGCATTCATCGT
CACAGCCATCCTGTTGATCTTCGTGGTGCCCGAGTTCCAGAACATGTTCCAGAGCTTCGGCGCTGATCTGCCGGTGTTCA
CGCAGTTCGTCATCAACCTCTCGGACCTGTTCCAGAATTACTGGTACATCATCTTCGGCGGCATCATCGCTGCGGTGGTG
GCCTTCGTGGCGGTGCATCGACGATCACCAAAATTCCGCCGATTCCTGGACCGTGTACTGCTGAAGCTGCCCATTGTCGG
CCCCATCCTGGACAAGGCCGCCACCGCGCGCTTTGGCCGCACGCTGTCCACCATGTTCGCGGCCGGCGTGCCTCTGGTGG
AGGCCCTGGAGTCGGTCTCCGGTGCCTGCGGCAGCACGGTGTACGAAGACGCCATCATGGAGATGAAGGACCAGGTGGCA
TCCGGCCAGCAGCTCAACGTGGCCATGCGACTGTCCAACCTGTTCCCGCACATGGTGGTGCAGATGGCCGCCATCGGCGA
GGAATCCGGCTCCCTGGACACCATGCTGGCGAAGGTCGCTGACTTCTACGAAGAAGAGGTGGACAACCAGATCGACAGCC
TCAGCAGTCTGCTGGAGCCCCTGATCATGGCGGTTCTGGGGGTGCTGGTCGGTGGCCTGGTCATCGCCATGTACCTGCCC
ATCTTCCAGATGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(280-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.088

100

0.581
  pilC Acinetobacter baumannii D1279779

56.618

100

0.566
  pilC Acinetobacter baylyi ADP1

54.657

100

0.547
  pilC Legionella pneumophila strain ERS1305867

55.639

97.794

0.544
  pilG Neisseria meningitidis 44/76-A

44.802

99.02

0.444
  pilG Neisseria gonorrhoeae MS11

44.802

99.02

0.444
  pilC Vibrio cholerae strain A1552

42.506

99.755

0.424
  pilC Vibrio campbellii strain DS40M4

41.626

99.51

0.414
  pilC Thermus thermophilus HB27

39.5

98.039

0.387