Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KU884_RS14365 Genome accession   NZ_CP050695
Coordinates   3041180..3042052 (+) Length   290 a.a.
NCBI ID   WP_167783270.1    Uniprot ID   A0A6H0IY42
Organism   Aquisalimonas sp. 2447     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3036180..3047052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU884_RS14355 (HC341_14290) pilB 3038205..3039929 (+) 1725 WP_167783268.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KU884_RS14360 (HC341_14295) pilC 3039935..3041161 (+) 1227 WP_167783269.1 type II secretion system F family protein Machinery gene
  KU884_RS14365 (HC341_14300) pilD 3041180..3042052 (+) 873 WP_167783270.1 A24 family peptidase Machinery gene
  KU884_RS14370 (HC341_14305) coaE 3042128..3042766 (+) 639 WP_167783271.1 dephospho-CoA kinase -
  KU884_RS14375 (HC341_14310) zapD 3042766..3043557 (+) 792 WP_167783272.1 cell division protein ZapD -
  KU884_RS14380 (HC341_14315) - 3043568..3043780 (+) 213 WP_167783273.1 DNA gyrase inhibitor YacG -
  KU884_RS14385 (HC341_14320) - 3043899..3044828 (-) 930 WP_167783274.1 Nudix family hydrolase -
  KU884_RS14390 (HC341_14325) argJ 3044839..3046050 (-) 1212 WP_167783275.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31566.39 Da        Isoelectric Point: 6.8462

>NTDB_id=434047 KU884_RS14365 WP_167783270.1 3041180..3042052(+) (pilD) [Aquisalimonas sp. 2447]
MTLLDALQQPAMLVPSVFVLGLLVGSFVNVVILRLPVMLERDWQQQASEILGQPQENAPRERFDLIHPGSRCPGCQRPIR
PWENIPVISWLALRGRCRGCGQRISARYPLVELITGLLSASVASHFGWGPELAAALILTWTLVALSGIDIDHQLLPDNIT
LPLLWLGLGISLAGLFTGIEDAVIGAMAGYLSLWLVFHVFRLVTGKEGMGYGDFKLLALLGAWLGWQALPVIILLSSLVG
AVAGIAMIALLGRDRQLPIPFGPYLAAAGWLTLLWRDDIIAGYLRWSGLG

Nucleotide


Download         Length: 873 bp        

>NTDB_id=434047 KU884_RS14365 WP_167783270.1 3041180..3042052(+) (pilD) [Aquisalimonas sp. 2447]
ATGACGTTACTGGACGCCCTCCAGCAGCCTGCCATGCTCGTTCCCTCGGTGTTCGTGCTGGGGCTGTTGGTGGGCAGCTT
TGTCAACGTGGTGATCCTGCGGCTACCGGTCATGCTGGAGCGGGACTGGCAACAGCAGGCCAGCGAGATCCTCGGGCAGC
CCCAGGAAAACGCCCCTCGCGAGCGGTTCGATCTGATCCATCCCGGATCCCGGTGCCCCGGCTGCCAGCGGCCGATCCGC
CCCTGGGAAAACATCCCGGTCATCAGCTGGCTGGCCCTGCGGGGTCGCTGTCGCGGCTGCGGCCAGCGCATCAGCGCACG
CTACCCTCTCGTGGAGCTGATCACCGGACTGCTCTCCGCCTCGGTGGCGTCGCACTTCGGCTGGGGCCCGGAACTCGCGG
CGGCGCTGATACTCACATGGACGCTCGTTGCCCTGTCCGGCATCGATATCGATCACCAGCTGCTTCCCGACAACATCACC
CTGCCGCTGCTCTGGCTTGGCCTTGGCATCAGCCTGGCCGGCCTGTTCACCGGCATCGAGGACGCGGTGATCGGCGCCAT
GGCCGGATACCTCAGCCTGTGGCTGGTTTTCCACGTCTTCCGCCTGGTCACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGTTGCTGGGCGCCTGGCTTGGCTGGCAGGCTCTGCCAGTGATCATCCTTCTCAGCTCCCTGGTGGGT
GCCGTGGCAGGCATCGCCATGATCGCGTTGCTCGGCCGTGACCGGCAACTACCGATCCCCTTCGGACCGTACCTTGCCGC
GGCCGGCTGGCTTACCTTACTGTGGCGGGACGATATCATCGCCGGTTACCTCCGGTGGTCCGGCCTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-126)

Type IV leader peptidase family (Peptidase_A24)

(136-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0IY42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.574

93.793

0.493
  pilD Acinetobacter baumannii D1279779

50.719

95.862

0.486
  pilD Neisseria gonorrhoeae MS11

52.256

91.724

0.479
  pilD Acinetobacter nosocomialis M2

49.64

95.862

0.476
  pilD Vibrio campbellii strain DS40M4

49.638

95.172

0.472