Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HB764_RS12745 Genome accession   NZ_CP050478
Coordinates   2730219..2731442 (+) Length   407 a.a.
NCBI ID   WP_255957062.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC011     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2725219..2736442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS12725 (HB764_12610) ampD 2726261..2726812 (-) 552 WP_134976391.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HB764_RS12730 (HB764_12615) nadC 2726905..2727792 (+) 888 WP_255957059.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HB764_RS12735 (HB764_12620) pilA 2728056..2728487 (+) 432 WP_255957060.1 pilin Machinery gene
  HB764_RS12740 (HB764_12625) pilB 2728499..2730184 (+) 1686 WP_255957061.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HB764_RS12745 (HB764_12630) pilC 2730219..2731442 (+) 1224 WP_255957062.1 type II secretion system F family protein Machinery gene
  HB764_RS12750 (HB764_12635) pilD 2731512..2732381 (+) 870 WP_255957063.1 A24 family peptidase Machinery gene
  HB764_RS12755 (HB764_12640) coaE 2732382..2732996 (+) 615 WP_255957064.1 dephospho-CoA kinase -
  HB764_RS12760 (HB764_12645) zapD 2733024..2733764 (+) 741 WP_005534051.1 cell division protein ZapD -
  HB764_RS12765 (HB764_12650) yacG 2733821..2734021 (+) 201 WP_012128882.1 DNA gyrase inhibitor YacG -
  HB764_RS12770 (HB764_12655) rplS 2734359..2734712 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  HB764_RS12775 (HB764_12660) trmD 2734754..2735497 (-) 744 WP_005534054.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HB764_RS12780 (HB764_12665) rimM 2735525..2736073 (-) 549 WP_255957065.1 ribosome maturation factor RimM -
  HB764_RS12785 (HB764_12670) rpsP 2736101..2736349 (-) 249 WP_005438039.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44994.19 Da        Isoelectric Point: 10.3023

>NTDB_id=433209 HB764_RS12745 WP_255957062.1 2730219..2731442(+) (pilC) [Vibrio campbellii strain LJC011]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKISHRVKDKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKATSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSNILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=433209 HB764_RS12745 WP_255957062.1 2730219..2731442(+) (pilC) [Vibrio campbellii strain LJC011]
ATGAAAACCATCGCTCCTCAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACCGAAATCGAGGTAAGAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGACAAAGACATCACGATATTTACTCGCCAAATTGCCACCATGCTA
ATGACGGGCGTACCAATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAGTGTCACAAGAGCGGTAGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAGCAGTCCGGTAATCTGTCTCAAGTCTTTGAGCGCTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCCTTTATTGGACTGAGTTTTGTGAGCCTGCTCATTTCCGGC
AAAATTATGTCGCAACGATCCGATTCATTTCGCCTTTTAGCCGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCTGT
ATTATCAAAAGCAGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAGCCACCTCAAAAACCTCCGGTAATATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCGATGTATATTGCCATGCGTAACTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGACATGCTCAACAAGATAGCCGCTATTTATGAGTTCGAGGTGGATAATACCGTTGATAATCTGAGTA
ATATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGCGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.017

100

0.99
  pilC Vibrio cholerae strain A1552

73.5

98.28

0.722
  pilC Acinetobacter baylyi ADP1

42.462

97.789

0.415
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.604

99.263

0.393
  pilG Neisseria gonorrhoeae MS11

39.066

100

0.391
  pilG Neisseria meningitidis 44/76-A

38.235

100

0.383