Detailed information NTG0433210

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HB764_RS12750
• Genome accession: NZ_CP050478
• Coordinates: 2731512..2732381 (+)
• Length: 289 a.a.
• NCBI ID: WP_255957063.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LJC011
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2726512..2737381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB764_RS12730 (HB764_12615)	nadC	2726905..2727792 (+)	888	WP_255957059.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HB764_RS12735 (HB764_12620)	pilA	2728056..2728487 (+)	432	WP_255957060.1	pilin	Machinery gene
HB764_RS12740 (HB764_12625)	pilB	2728499..2730184 (+)	1686	WP_255957061.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HB764_RS12745 (HB764_12630)	pilC	2730219..2731442 (+)	1224	WP_255957062.1	type II secretion system F family protein	Machinery gene
HB764_RS12750 (HB764_12635)	pilD	2731512..2732381 (+)	870	WP_255957063.1	A24 family peptidase	Machinery gene
HB764_RS12755 (HB764_12640)	coaE	2732382..2732996 (+)	615	WP_255957064.1	dephospho-CoA kinase	-
HB764_RS12760 (HB764_12645)	zapD	2733024..2733764 (+)	741	WP_005534051.1	cell division protein ZapD	-
HB764_RS12765 (HB764_12650)	yacG	2733821..2734021 (+)	201	WP_012128882.1	DNA gyrase inhibitor YacG	-
HB764_RS12770 (HB764_12655)	rplS	2734359..2734712 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
HB764_RS12775 (HB764_12660)	trmD	2734754..2735497 (-)	744	WP_005534054.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
HB764_RS12780 (HB764_12665)	rimM	2735525..2736073 (-)	549	WP_255957065.1	ribosome maturation factor RimM	-
HB764_RS12785 (HB764_12670)	rpsP	2736101..2736349 (-)	249	WP_005438039.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32639.82 Da
• Isoelectric Point: 7.5424

>NTDB_id=433210 HB764_RS12750 WP_255957063.1 2731512..2732381(+) (pilD) [Vibrio campbellii strain LJC011]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTQIRIR
DNIPVISWLLLRGKCHNCQSPINARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALAFAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLITGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=433210 HB764_RS12750 WP_255957063.1 2731512..2732381(+) (pilD) [Vibrio campbellii strain LJC011]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGCACGCAAATTCGCATTCGT
GACAATATCCCGGTGATTAGTTGGCTTCTTCTGCGCGGTAAATGCCACAACTGCCAATCTCCTATCAATGCACGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTCCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTTTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
AGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTATAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTCGCGGCATTGGGCGCTTGGCTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTTGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATACTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	98.616	100	0.986
pilD	Vibrio cholerae strain A1552	74.306	99.654	0.74
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	44.928	95.502	0.429