Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | HB764_RS04450 | Genome accession | NZ_CP050478 |
| Coordinates | 945740..946027 (+) | Length | 95 a.a. |
| NCBI ID | WP_255957771.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain LJC011 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 940740..951027
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HB764_RS04440 (HB764_04425) | - | 943248..943520 (+) | 273 | WP_255957769.1 | HU family DNA-binding protein | - |
| HB764_RS04445 (HB764_04430) | ppiD | 943735..945594 (+) | 1860 | WP_255957770.1 | peptidylprolyl isomerase | - |
| HB764_RS04450 (HB764_04435) | comEA | 945740..946027 (+) | 288 | WP_255957771.1 | ComEA family DNA-binding protein | Machinery gene |
| HB764_RS04455 (HB764_04440) | rrtA | 946174..946725 (-) | 552 | WP_255957772.1 | rhombosortase | - |
| HB764_RS04460 (HB764_04445) | - | 946729..947346 (+) | 618 | WP_050918351.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| HB764_RS04465 (HB764_04450) | - | 947367..948701 (-) | 1335 | WP_255957773.1 | anti-phage deoxyguanosine triphosphatase | - |
| HB764_RS04470 (HB764_04455) | yfbR | 948705..949289 (-) | 585 | WP_005425568.1 | 5'-deoxynucleotidase | - |
| HB764_RS04475 (HB764_04460) | - | 949373..950587 (-) | 1215 | WP_005529906.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 95 a.a. Molecular weight: 10561.27 Da Isoelectric Point: 6.9800
>NTDB_id=433197 HB764_RS04450 WP_255957771.1 945740..946027(+) (comEA) [Vibrio campbellii strain LJC011]
MKWMLTLCLLILAPMSWAETKTKADKYEGIEITVNVNSATAQEIATLLNGIGEKKAQDIVEYRNEHGPFKTAADLTKVKG
IGEATVRKNEDRILL
MKWMLTLCLLILAPMSWAETKTKADKYEGIEITVNVNSATAQEIATLLNGIGEKKAQDIVEYRNEHGPFKTAADLTKVKG
IGEATVRKNEDRILL
Nucleotide
Download Length: 288 bp
>NTDB_id=433197 HB764_RS04450 WP_255957771.1 945740..946027(+) (comEA) [Vibrio campbellii strain LJC011]
ATGAAATGGATGTTAACACTGTGCTTATTGATACTCGCGCCGATGAGCTGGGCGGAAACAAAGACTAAAGCGGATAAGTA
TGAAGGTATTGAGATTACGGTTAACGTTAACTCTGCCACTGCACAAGAGATTGCGACGCTACTTAATGGTATTGGTGAGA
AGAAAGCGCAAGATATTGTTGAGTATCGCAACGAGCACGGCCCATTTAAAACCGCTGCGGATCTTACAAAGGTGAAAGGC
ATCGGTGAGGCGACTGTGAGGAAGAACGAAGACCGCATCCTGCTGTAA
ATGAAATGGATGTTAACACTGTGCTTATTGATACTCGCGCCGATGAGCTGGGCGGAAACAAAGACTAAAGCGGATAAGTA
TGAAGGTATTGAGATTACGGTTAACGTTAACTCTGCCACTGCACAAGAGATTGCGACGCTACTTAATGGTATTGGTGAGA
AGAAAGCGCAAGATATTGTTGAGTATCGCAACGAGCACGGCCCATTTAAAACCGCTGCGGATCTTACAAAGGTGAAAGGC
ATCGGTGAGGCGACTGTGAGGAAGAACGAAGACCGCATCCTGCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
98.947 |
100 |
0.989 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
77.895 |
100 |
0.779 |
| comEA | Vibrio cholerae C6706 |
58.333 |
100 |
0.589 |
| comEA | Vibrio cholerae strain A1552 |
58.333 |
100 |
0.589 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
39.286 |
100 |
0.463 |
| comEA | Acinetobacter baumannii strain A118 |
32.787 |
100 |
0.421 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comEA | Acinetobacter baylyi ADP1 |
48.649 |
77.895 |
0.379 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.263 |
0.368 |