Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HB763_RS01980 Genome accession   NZ_CP050475
Coordinates   448810..450033 (+) Length   407 a.a.
NCBI ID   WP_255985278.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC012     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443810..455033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB763_RS01960 (HB763_01965) ampD 444867..445418 (-) 552 WP_255985276.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HB763_RS01965 (HB763_01970) nadC 445511..446398 (+) 888 WP_010643264.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HB763_RS01970 (HB763_01975) pilA 446662..447090 (+) 429 WP_050912911.1 type IV pilin protein Machinery gene
  HB763_RS01975 (HB763_01980) pilB 447090..448775 (+) 1686 WP_255985277.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HB763_RS01980 (HB763_01985) pilC 448810..450033 (+) 1224 WP_255985278.1 type II secretion system F family protein Machinery gene
  HB763_RS01985 (HB763_01990) pilD 450106..450975 (+) 870 WP_255985279.1 A24 family peptidase Machinery gene
  HB763_RS01990 (HB763_01995) coaE 450976..451590 (+) 615 WP_255985280.1 dephospho-CoA kinase -
  HB763_RS01995 (HB763_02000) zapD 451618..452358 (+) 741 WP_005534051.1 cell division protein ZapD -
  HB763_RS02000 (HB763_02005) yacG 452415..452615 (+) 201 WP_012128882.1 DNA gyrase inhibitor YacG -
  HB763_RS02005 (HB763_02010) rplS 452954..453307 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  HB763_RS02010 (HB763_02015) trmD 453349..454092 (-) 744 WP_005534054.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HB763_RS02015 (HB763_02020) rimM 454120..454668 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  HB763_RS02020 (HB763_02025) rpsP 454696..454944 (-) 249 WP_005438039.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44963.26 Da        Isoelectric Point: 10.3978

>NTDB_id=433139 HB763_RS01980 WP_255985278.1 448810..450033(+) (pilC) [Vibrio campbellii strain LJC012]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEVEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMNVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSNSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTCGNMHYQLAIEEVYRDTAAG
MPIYIAMRSCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=433139 HB763_RS01980 WP_255985278.1 448810..450033(+) (pilC) [Vibrio campbellii strain LJC012]
ATGAAAACCATCGCTCCACAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAGACCTCTGGAAACGT
GCTCGCCATGACCGAAGTCGAGGTAAGAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACTATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAATGTCACAAGAGCGGTAGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAGCAGTCCGGTAACCTATCTCAAGTCTTTGAGCGCTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCCTTTATTGGACTGAGTTTTGTGAGCCTGCTCATTTCCGGC
AAAATTATGTCGCAACGATCCAATTCATTTCGCCTTTTAGCCGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCTGT
ATTATCCAAAGCAGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTGCGGTAATATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCGATATATATTGCCATGCGTAGCTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGACATGCTCAACAAGATAGCCGCTATTTATGAGTTCGAGGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGCGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

98.526

100

0.985
  pilC Vibrio cholerae strain A1552

73

98.28

0.717
  pilC Acinetobacter baylyi ADP1

42.462

97.789

0.415
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

38.916

99.754

0.388
  pilG Neisseria gonorrhoeae MS11

38.48

100

0.386
  pilG Neisseria meningitidis 44/76-A

37.99

100

0.381