Detailed information NTG0433140

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HB763_RS01985
• Genome accession: NZ_CP050475
• Coordinates: 450106..450975 (+)
• Length: 289 a.a.
• NCBI ID: WP_255985279.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LJC012
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 445106..455975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB763_RS01965 (HB763_01970)	nadC	445511..446398 (+)	888	WP_010643264.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HB763_RS01970 (HB763_01975)	pilA	446662..447090 (+)	429	WP_050912911.1	type IV pilin protein	Machinery gene
HB763_RS01975 (HB763_01980)	pilB	447090..448775 (+)	1686	WP_255985277.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HB763_RS01980 (HB763_01985)	pilC	448810..450033 (+)	1224	WP_255985278.1	type II secretion system F family protein	Machinery gene
HB763_RS01985 (HB763_01990)	pilD	450106..450975 (+)	870	WP_255985279.1	A24 family peptidase	Machinery gene
HB763_RS01990 (HB763_01995)	coaE	450976..451590 (+)	615	WP_255985280.1	dephospho-CoA kinase	-
HB763_RS01995 (HB763_02000)	zapD	451618..452358 (+)	741	WP_005534051.1	cell division protein ZapD	-
HB763_RS02000 (HB763_02005)	yacG	452415..452615 (+)	201	WP_012128882.1	DNA gyrase inhibitor YacG	-
HB763_RS02005 (HB763_02010)	rplS	452954..453307 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
HB763_RS02010 (HB763_02015)	trmD	453349..454092 (-)	744	WP_005534054.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
HB763_RS02015 (HB763_02020)	rimM	454120..454668 (-)	549	WP_005534055.1	ribosome maturation factor RimM	-
HB763_RS02020 (HB763_02025)	rpsP	454696..454944 (-)	249	WP_005438039.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32518.81 Da
• Isoelectric Point: 7.8754

>NTDB_id=433140 HB763_RS01985 WP_255985279.1 450106..450975(+) (pilD) [Vibrio campbellii strain LJC012]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPRIMELEWRRECAESFPEYKIEPTKETLTLSVPRSSCPQCGTPIRIR
DNIPVISWLLLKGKCHKCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=433140 HB763_RS01985 WP_255985279.1 450106..450975(+) (pilD) [Vibrio campbellii strain LJC012]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTAGTTATCTACCGTTTACCCAGGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCAACCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCCGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTAATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAAATGCCAAGCGCCCATCAGTGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACCCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
AGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGCTGGGTTGGCAATCTCTACCGATGATTATTTTGCTCTCTTCGGTGGTTGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.232	100	0.972
pilD	Vibrio cholerae strain A1552	75.347	99.654	0.751
pilD	Acinetobacter nosocomialis M2	53.137	93.772	0.498
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443