Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | HB760_RS12555 | Genome accession | NZ_CP050463 |
| Coordinates | 2702297..2702755 (+) | Length | 152 a.a. |
| NCBI ID | WP_017189133.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain LJC015 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2697297..2707755
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HB760_RS12540 (HB760_12455) | pdhR | 2699328..2700095 (-) | 768 | WP_005428674.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| HB760_RS12545 (HB760_12460) | ampD | 2700500..2701051 (-) | 552 | WP_012128874.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| HB760_RS12550 (HB760_12465) | nadC | 2701144..2702031 (+) | 888 | WP_010643264.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| HB760_RS12555 (HB760_12470) | pilA | 2702297..2702755 (+) | 459 | WP_017189133.1 | pilin | Machinery gene |
| HB760_RS12560 (HB760_12475) | pilB | 2702761..2704446 (+) | 1686 | WP_255899281.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| HB760_RS12565 (HB760_12480) | pilC | 2704481..2705704 (+) | 1224 | WP_255899279.1 | type II secretion system F family protein | Machinery gene |
| HB760_RS12570 (HB760_12485) | pilD | 2705777..2706646 (+) | 870 | WP_255899277.1 | A24 family peptidase | Machinery gene |
| HB760_RS12575 (HB760_12490) | coaE | 2706647..2707261 (+) | 615 | WP_255899274.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15777.93 Da Isoelectric Point: 7.7818
>NTDB_id=433010 HB760_RS12555 WP_017189133.1 2702297..2702755(+) (pilA) [Vibrio campbellii strain LJC015]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQKYVAKSEVASALATLTGVKTNVEAYAVENGAFPDGSTANQTEAD
LGVPSTIPSGVIAFSTASSAGGTIKFTFNASGVSNLITSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQKYVAKSEVASALATLTGVKTNVEAYAVENGAFPDGSTANQTEAD
LGVPSTIPSGVIAFSTASSAGGTIKFTFNASGVSNLITSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
Nucleotide
Download Length: 459 bp
>NTDB_id=433010 HB760_RS12555 WP_017189133.1 2702297..2702755(+) (pilA) [Vibrio campbellii strain LJC015]
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACGCTGATTGAATTGATGATTGTGGTAGCGGTTATTGGTGTTTT
AGCTGCGATTGCAATTCCTCAATATCAAAAATATGTAGCGAAATCAGAAGTCGCATCCGCATTAGCTACATTAACTGGTG
TAAAAACTAACGTTGAAGCTTACGCTGTAGAAAATGGCGCTTTTCCTGATGGTTCAACAGCAAACCAAACAGAAGCAGAT
CTAGGTGTACCGAGCACAATCCCTTCAGGTGTTATCGCATTTTCAACTGCTAGTTCAGCGGGTGGCACTATCAAGTTCAC
GTTCAATGCCTCAGGCGTAAGTAACCTCATCACTAGCAAAAACTTTGAATTGGTTCGTGCTTCTGATGGTACTTGGACAT
GTCAAGGCTCCTCAGCTAGCCCTGTTACAGACGATTTGTTACCAAAAAACTGTCGCTAG
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACGCTGATTGAATTGATGATTGTGGTAGCGGTTATTGGTGTTTT
AGCTGCGATTGCAATTCCTCAATATCAAAAATATGTAGCGAAATCAGAAGTCGCATCCGCATTAGCTACATTAACTGGTG
TAAAAACTAACGTTGAAGCTTACGCTGTAGAAAATGGCGCTTTTCCTGATGGTTCAACAGCAAACCAAACAGAAGCAGAT
CTAGGTGTACCGAGCACAATCCCTTCAGGTGTTATCGCATTTTCAACTGCTAGTTCAGCGGGTGGCACTATCAAGTTCAC
GTTCAATGCCTCAGGCGTAAGTAACCTCATCACTAGCAAAAACTTTGAATTGGTTCGTGCTTCTGATGGTACTTGGACAT
GTCAAGGCTCCTCAGCTAGCCCTGTTACAGACGATTTGTTACCAAAAAACTGTCGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
48.077 |
100 |
0.493 |
| pilA | Vibrio cholerae C6706 |
48.077 |
100 |
0.493 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.077 |
100 |
0.493 |
| pilA | Acinetobacter baumannii strain A118 |
46.528 |
94.737 |
0.441 |
| pilA | Pseudomonas aeruginosa PAK |
43.791 |
100 |
0.441 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
46.324 |
89.474 |
0.414 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
33.143 |
100 |
0.382 |
| pilE | Neisseria gonorrhoeae MS11 |
34.783 |
100 |
0.368 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.671 |
96.053 |
0.362 |