Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HB760_RS12565 Genome accession   NZ_CP050463
Coordinates   2704481..2705704 (+) Length   407 a.a.
NCBI ID   WP_255899279.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC015     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2699481..2710704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB760_RS12545 (HB760_12460) ampD 2700500..2701051 (-) 552 WP_012128874.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HB760_RS12550 (HB760_12465) nadC 2701144..2702031 (+) 888 WP_010643264.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HB760_RS12555 (HB760_12470) pilA 2702297..2702755 (+) 459 WP_017189133.1 pilin Machinery gene
  HB760_RS12560 (HB760_12475) pilB 2702761..2704446 (+) 1686 WP_255899281.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HB760_RS12565 (HB760_12480) pilC 2704481..2705704 (+) 1224 WP_255899279.1 type II secretion system F family protein Machinery gene
  HB760_RS12570 (HB760_12485) pilD 2705777..2706646 (+) 870 WP_255899277.1 A24 family peptidase Machinery gene
  HB760_RS12575 (HB760_12490) coaE 2706647..2707261 (+) 615 WP_255899274.1 dephospho-CoA kinase -
  HB760_RS12580 (HB760_12495) zapD 2707289..2708029 (+) 741 WP_255899271.1 cell division protein ZapD -
  HB760_RS12585 (HB760_12500) yacG 2708086..2708286 (+) 201 WP_012128882.1 DNA gyrase inhibitor YacG -
  HB760_RS12590 (HB760_12505) rplS 2708624..2708977 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  HB760_RS12595 (HB760_12510) trmD 2709019..2709762 (-) 744 WP_005534054.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HB760_RS12600 (HB760_12515) rimM 2709790..2710338 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  HB760_RS12605 (HB760_12520) rpsP 2710366..2710614 (-) 249 WP_005438039.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44979.26 Da        Isoelectric Point: 10.4489

>NTDB_id=433012 HB760_RS12565 WP_255899279.1 2704481..2705704(+) (pilC) [Vibrio campbellii strain LJC015]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMNVTRAVEAGTPMSKAMRTASTHFDPLYTNLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRSCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=433012 HB760_RS12565 WP_255899279.1 2704481..2705704(+) (pilC) [Vibrio campbellii strain LJC015]
ATGAAAACCATCGCTCCACAACTTAAAAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACCGAAATCGAGGTAAGAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACCATGCTA
ATGACGGGCGTACCAATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAATGTCACAAGAGCGGTAGAAGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAAACCTAATCGCGACTGGTGAGCAGTCCGGTAACCTATCTCAAGTCTTTGAGCGCTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCCTTTATTGGACTGAGTTTTGTGAGCCTGCTCATTTCCGGC
AAAATTATGTCGCAACGATCCGATTCATTTCGCCTTTTAGCCGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCTGT
ATTATCCAAAGCAGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAATATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCGATGTATATTGCCATGCGTAGCTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGACATGCTCAACAAGATAGCCGCTATTTATGAGTTCGAGGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGCGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.263

100

0.993
  pilC Vibrio cholerae strain A1552

73.5

98.28

0.722
  pilC Acinetobacter baylyi ADP1

42.462

97.789

0.415
  pilC Pseudomonas stutzeri DSM 10701

41.162

97.297

0.4
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Legionella pneumophila strain ERS1305867

39.604

99.263

0.393
  pilG Neisseria gonorrhoeae MS11

39.312

100

0.393
  pilG Neisseria meningitidis 44/76-A

38.48

100

0.386