Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GU3_RS15800 Genome accession   NC_016745
Coordinates   3362315..3363541 (+) Length   408 a.a.
NCBI ID   WP_014293535.1    Uniprot ID   H2FV11
Organism   Oceanimonas sp. GK1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3357315..3368541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU3_RS15775 (GU3_15355) ampD 3357806..3358354 (-) 549 WP_014293530.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GU3_RS15780 (GU3_15360) - 3358427..3358945 (+) 519 WP_014293531.1 TIGR02281 family clan AA aspartic protease -
  GU3_RS15785 (GU3_15365) nadC 3358995..3359849 (+) 855 WP_014293532.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GU3_RS16935 (GU3_15370) - 3360138..3360575 (+) 438 WP_014293533.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GU3_RS15795 (GU3_15375) pilB 3360577..3362289 (+) 1713 WP_014293534.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GU3_RS15800 (GU3_15380) pilC 3362315..3363541 (+) 1227 WP_014293535.1 type II secretion system F family protein Machinery gene
  GU3_RS15805 (GU3_15385) pilD 3363892..3364746 (+) 855 WP_014293536.1 A24 family peptidase Machinery gene
  GU3_RS15810 (GU3_15390) coaE 3364743..3365360 (+) 618 WP_014293537.1 dephospho-CoA kinase -
  GU3_RS15815 (GU3_15395) trmB 3365492..3366208 (-) 717 WP_014293538.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GU3_RS15820 (GU3_15400) lysS 3366392..3367879 (-) 1488 WP_014293539.1 lysine--tRNA ligase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45371.48 Da        Isoelectric Point: 10.1699

>NTDB_id=43283 GU3_RS15800 WP_014293535.1 3362315..3363541(+) (pilC) [Oceanimonas sp. GK1]
MATTKDFRVYPYRWEGINRKGQKVSGFVQAADAKAARRELQRQGVNTLRVRRKRQSLLARYRDAIKPADIAIITRQVATM
LGAGVPLVQTLQIIARSYEKSSIRELAGMLAADVEGGTPLSDALKKHPRHFDRLYCDLVHSGEQTGALEHIFDRIAIYRE
KAEAIKSKIRKAMFYPAMVILVAMAVTAILLLFVIPQFEDIFAGFGATLPLFTQMVINLSRWLQHYWLYLLAAMVVSVWL
YVRAWRNSQQVRDATDRLVLRLPIVGTILHKAALARFARTLATTFSAGIPLVEGLLSSAGAAGNVVYRQAVLQLRDEVIA
GMQMNIAMRATGLFPDMVVQMIMIGEESGAIDDMMHKVASIYEREVDDAVDGLTSLIEPLIMVVLGVLVGGLVIAMYLPI
FNLGSVVR

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=43283 GU3_RS15800 WP_014293535.1 3362315..3363541(+) (pilC) [Oceanimonas sp. GK1]
ATGGCAACCACAAAGGACTTTCGGGTTTACCCCTACAGATGGGAAGGCATTAACCGCAAAGGGCAGAAGGTGTCGGGCTT
TGTGCAGGCTGCCGACGCCAAGGCCGCCCGGCGCGAGCTGCAGCGCCAGGGGGTGAACACCCTCAGGGTAAGGCGCAAAC
GCCAGAGCCTGCTGGCCCGCTACAGGGACGCCATCAAGCCCGCCGACATCGCCATCATCACCCGCCAGGTCGCCACCATG
CTGGGGGCCGGCGTGCCCCTGGTGCAAACCCTGCAAATCATCGCCCGCTCCTACGAGAAATCCAGCATTCGCGAGCTGGC
CGGCATGCTGGCCGCCGACGTGGAAGGCGGCACGCCGCTGTCCGACGCCCTGAAAAAGCATCCGCGCCATTTTGACCGTC
TTTACTGCGATCTGGTGCACTCCGGAGAGCAGACCGGGGCGCTGGAGCATATTTTTGACCGCATCGCCATCTACCGGGAA
AAGGCCGAGGCCATCAAATCCAAGATCCGCAAGGCCATGTTTTACCCGGCCATGGTGATCCTGGTGGCCATGGCGGTAAC
CGCCATTTTGCTGCTGTTCGTCATTCCCCAGTTCGAGGACATTTTTGCCGGCTTCGGCGCTACCCTGCCGCTGTTTACCC
AGATGGTGATCAACCTGTCGCGCTGGCTGCAGCACTACTGGCTGTACCTGCTGGCCGCCATGGTGGTGAGCGTCTGGCTG
TATGTGCGGGCCTGGCGCAACTCGCAACAGGTGCGCGATGCCACCGACCGCCTGGTGCTGCGCCTGCCCATTGTCGGTAC
CATTCTGCACAAGGCCGCCCTGGCCCGTTTTGCCCGCACCCTGGCCACCACCTTTTCCGCCGGCATTCCGCTGGTGGAAG
GCCTGCTGTCGTCCGCCGGCGCCGCCGGCAACGTGGTCTACCGCCAGGCGGTGCTGCAACTGCGCGACGAGGTGATCGCC
GGCATGCAGATGAACATCGCCATGCGCGCCACCGGGCTGTTTCCGGACATGGTGGTGCAGATGATCATGATCGGCGAGGA
GTCGGGCGCCATCGACGACATGATGCACAAGGTGGCCAGCATTTATGAGCGGGAAGTGGACGACGCCGTGGACGGCCTCA
CCAGCCTGATTGAGCCGCTGATCATGGTGGTGCTGGGCGTTTTGGTTGGCGGCCTGGTCATCGCCATGTATCTTCCCATC
TTTAACCTGGGCAGCGTGGTACGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H2FV11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.099

99.265

0.517
  pilC Pseudomonas stutzeri DSM 10701

53.283

97.059

0.517
  pilC Acinetobacter baumannii D1279779

51.471

100

0.515
  pilC Vibrio cholerae strain A1552

47.912

99.755

0.478
  pilC Legionella pneumophila strain ERS1305867

48.99

97.059

0.475
  pilC Vibrio campbellii strain DS40M4

47.103

97.304

0.458
  pilG Neisseria gonorrhoeae MS11

41.404

100

0.419
  pilG Neisseria meningitidis 44/76-A

41.162

100

0.417
  pilC Thermus thermophilus HB27

40.648

98.284

0.4

Multiple sequence alignment