Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HPL003_RS18040 Genome accession   NC_016641
Coordinates   3941718..3942986 (+) Length   422 a.a.
NCBI ID   WP_014281150.1    Uniprot ID   G7W4P7
Organism   Paenibacillus terrae HPL-003     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3936718..3947986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPL003_RS18015 (HPL003_18495) - 3937526..3937780 (+) 255 WP_014281144.1 DUF3243 domain-containing protein -
  HPL003_RS18020 (HPL003_18500) - 3938020..3938793 (+) 774 WP_014281145.1 DUF3388 domain-containing protein -
  HPL003_RS18025 (HPL003_18505) - 3938824..3939945 (+) 1122 WP_014281146.1 helix-turn-helix domain-containing protein -
  HPL003_RS29250 (HPL003_18510) - 3940030..3940194 (+) 165 WP_014281147.1 hypothetical protein -
  HPL003_RS18030 (HPL003_18515) - 3940335..3940826 (+) 492 WP_014281148.1 YajQ family cyclic di-GMP-binding protein -
  HPL003_RS18035 (HPL003_18520) pgsA 3941035..3941622 (+) 588 WP_014281149.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HPL003_RS18040 (HPL003_18525) cinA 3941718..3942986 (+) 1269 WP_014281150.1 competence/damage-inducible protein A Machinery gene
  HPL003_RS18045 (HPL003_18530) recA 3943233..3944294 (+) 1062 WP_014281151.1 recombinase RecA Machinery gene
  HPL003_RS18050 (HPL003_18535) - 3944546..3945241 (+) 696 WP_420795087.1 regulatory protein RecX -
  HPL003_RS18055 (HPL003_18540) rny 3945615..3947159 (+) 1545 WP_014281153.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46326.07 Da        Isoelectric Point: 4.7830

>NTDB_id=43248 HPL003_RS18040 WP_014281150.1 3941718..3942986(+) (cinA) [Paenibacillus terrae HPL-003]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNMDRLQEAVRLAQKRADIILFSGGLGPTQDDLTKDA
IAAVLGRKLHIDRLAMDKLEHFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQNGKYYVVLPGPPKELKPMF
ENQAKPWLLQQALSGKELPIYSKMLKFAGIGESALETRLLDLIKSQTDPTIAPYAKEGEVTIRISTKAANESEALVKLGA
TEAEIQQRLSEYMYASEDVTLEKVIVDLMSDRGLTVSAAESCTGGMLMEHITSVPGSSVMFQGGIVCYSNEMKKKLLNVP
HDYLEGDNAPGAVSEEVALVLAEQARMVTDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVYELKLSGNRETIR
LRSVKAILYRLWRRLVENEQLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=43248 HPL003_RS18040 WP_014281150.1 3941718..3942986(+) (cinA) [Paenibacillus terrae HPL-003]
ATGAAAGCTGAAATCATCGCAGTAGGAACTGAATTATTGCTCGGACAAATTGTGAACACAAATGCCCAATATTTGTCACA
AGAGTTGGCTACGATTGGGATTGATGTATATTTTCAGACGGTTGTTGGTGATAACATGGATCGACTTCAGGAAGCGGTAC
GTCTGGCTCAGAAGCGTGCGGATATTATTTTGTTCTCGGGCGGTTTGGGACCGACTCAGGATGATTTGACGAAAGATGCA
ATCGCCGCTGTGCTGGGGCGTAAATTGCATATAGACCGTCTCGCTATGGATAAGCTGGAACATTTTTTCCGTAATCGCGG
GGTGGAAATGACCGAAAATAATCGGCGTCAGGCGCTTTCTATTGAAGGAGCTACCCCTCTTGAAAATGAGACAGGGCTGG
CTGTGGGCGATGCGATTGCACAGAATGGTAAATACTATGTGGTTTTGCCTGGACCGCCGAAGGAACTCAAACCGATGTTT
GAGAATCAGGCAAAACCTTGGTTGCTCCAGCAAGCACTGAGTGGTAAGGAACTGCCGATTTATTCGAAAATGCTAAAGTT
TGCAGGAATCGGTGAGTCGGCTCTCGAAACCCGCTTATTGGATCTGATCAAATCACAGACAGATCCGACCATTGCTCCTT
ATGCCAAGGAGGGAGAGGTCACGATCCGTATATCCACCAAGGCGGCCAACGAGAGCGAGGCACTGGTTAAGCTGGGGGCT
ACGGAAGCAGAAATTCAGCAACGTCTTTCGGAATACATGTATGCGAGTGAGGACGTCACGCTGGAGAAGGTTATTGTGGA
TTTGATGTCCGATCGCGGACTGACTGTTAGCGCGGCGGAAAGCTGCACAGGTGGAATGCTGATGGAGCACATCACTTCCG
TTCCGGGCAGCTCAGTTATGTTTCAGGGCGGTATCGTGTGTTATTCCAATGAAATGAAGAAGAAGCTGCTCAACGTGCCA
CATGATTATTTGGAGGGGGACAATGCGCCCGGCGCAGTAAGCGAGGAAGTAGCCCTTGTACTTGCGGAGCAGGCAAGAAT
GGTCACGGACAGTGATTTCGGACTCTCGGTTACTGGTGTAGCTGGACCCGGATATTCTGAGCGGAAGCCGGTTGGTCTGG
TTTATATCGGTATTGCTGAGCGTGACAAAGAAACTGAGGTATACGAGCTGAAATTGAGCGGGAATCGTGAAACGATCCGT
CTGCGGTCTGTTAAGGCAATCCTGTACAGATTATGGCGCAGACTGGTGGAAAATGAGCAGCTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7W4P7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

97.156

0.486
  cinA Streptococcus mitis NCTC 12261

49.756

97.156

0.483
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

49.01

95.735

0.469
  cinA Streptococcus mutans UA159

45.412

100

0.457
  cinA Streptococcus suis isolate S10

44.125

90.758

0.4

Multiple sequence alignment