Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HPL003_RS18045 Genome accession   NC_016641
Coordinates   3943233..3944294 (+) Length   353 a.a.
NCBI ID   WP_014281151.1    Uniprot ID   G7W4P8
Organism   Paenibacillus terrae HPL-003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3938233..3949294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPL003_RS18025 (HPL003_18505) - 3938824..3939945 (+) 1122 WP_014281146.1 helix-turn-helix domain-containing protein -
  HPL003_RS29250 (HPL003_18510) - 3940030..3940194 (+) 165 WP_014281147.1 hypothetical protein -
  HPL003_RS18030 (HPL003_18515) - 3940335..3940826 (+) 492 WP_014281148.1 YajQ family cyclic di-GMP-binding protein -
  HPL003_RS18035 (HPL003_18520) pgsA 3941035..3941622 (+) 588 WP_014281149.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HPL003_RS18040 (HPL003_18525) cinA 3941718..3942986 (+) 1269 WP_014281150.1 competence/damage-inducible protein A Machinery gene
  HPL003_RS18045 (HPL003_18530) recA 3943233..3944294 (+) 1062 WP_014281151.1 recombinase RecA Machinery gene
  HPL003_RS18050 (HPL003_18535) - 3944546..3945241 (+) 696 WP_420795087.1 regulatory protein RecX -
  HPL003_RS18055 (HPL003_18540) rny 3945615..3947159 (+) 1545 WP_014281153.1 ribonuclease Y -
  HPL003_RS18060 (HPL003_18545) - 3947235..3948029 (+) 795 WP_043922434.1 TIGR00282 family metallophosphoesterase -
  HPL003_RS18065 (HPL003_18550) - 3948160..3948420 (+) 261 WP_007430104.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38176.48 Da        Isoelectric Point: 5.2061

>NTDB_id=43249 HPL003_RS18045 WP_014281151.1 3943233..3944294(+) (recA) [Paenibacillus terrae HPL-003]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMQVETSPSGSIALDIALGTGGFPRGRVIEIYGPESSGKTTVALHAIAE
VQKAGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKMGNDIVGNRT
RIKVVKNKVAPPFRQAEVDIMYGEGISREGSLIDIGTEHDIVDKSGAWYSYEGERLGQGRENAKQFLKENPNIASTIEQK
IRVASNLITTVAPPTEEELAKQAKEEQELLELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=43249 HPL003_RS18045 WP_014281151.1 3943233..3944294(+) (recA) [Paenibacillus terrae HPL-003]
TTGTCAGATCGTCGTGCTGCGCTGGATATGGCGCTCCGTCAAATAGAAAAGCAATTCGGTAAAGGTTCCATTATGAAGTT
AGGTGAGTCCACACATATGCAAGTGGAAACCTCTCCCAGTGGTTCGATTGCTTTGGATATTGCATTAGGAACGGGCGGCT
TCCCGAGAGGCCGAGTTATTGAAATATATGGACCGGAATCGTCCGGTAAAACGACAGTAGCACTTCACGCTATCGCAGAG
GTACAAAAAGCAGGCGGACAAGCCGCCTTTATCGACGCCGAGCATGCGCTCGATCCGTCGTATGCCAGCAAGCTGGGTGT
CAATATTGATGAGTTGTTGCTATCGCAGCCGGATACAGGGGAGCAGGCACTTGAGATTGCCGAAGCGCTTGTACGTAGTG
GGGCAGTGGACATTGTTGTTGTTGACTCCGTAGCAGCACTTGTGCCGAAGGCGGAGATTGAAGGCGAGATGGGAGATTCC
CACGTTGGTCTTCAAGCCCGTTTGATGTCACAGGCATTACGTAAGCTGTCCGGTGCTATTAACAAGTCAAAAACGATTGC
TATCTTTATTAACCAATTGCGTGAAAAAGTAGGCGTTATGTTTGGTAATCCTGAAACGACACCAGGCGGACGTGCTCTGA
AATTTTACTCCACTGTACGTTTGGATGTCCGTCGTATTGAAAGCTTGAAAATGGGGAACGACATTGTAGGTAACCGCACA
CGTATTAAAGTGGTGAAGAACAAGGTGGCGCCTCCTTTCCGTCAGGCCGAAGTGGATATTATGTACGGGGAAGGCATCTC
CAGAGAAGGCAGCTTGATCGACATTGGTACAGAGCATGACATTGTTGACAAGAGCGGAGCCTGGTATTCCTATGAAGGTG
AGCGACTCGGTCAGGGACGTGAAAATGCGAAGCAATTTTTGAAGGAAAATCCGAACATTGCTAGCACGATCGAGCAAAAA
ATTCGGGTGGCCAGCAACCTGATTACGACAGTAGCTCCGCCGACAGAAGAAGAGTTGGCAAAGCAAGCCAAGGAAGAACA
GGAATTGCTGGAGCTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7W4P8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.093

91.218

0.776
  recA Latilactobacillus sakei subsp. sakei 23K

71.976

96.034

0.691
  recA Streptococcus mitis NCTC 12261

66.762

98.867

0.66
  recA Streptococcus mutans UA159

66.571

99.15

0.66
  recA Streptococcus mitis SK321

66.476

98.867

0.657
  recA Streptococcus pneumoniae TIGR4

68.58

93.768

0.643
  recA Streptococcus pneumoniae Rx1

68.58

93.768

0.643
  recA Streptococcus pneumoniae D39

68.58

93.768

0.643
  recA Streptococcus pneumoniae R6

68.58

93.768

0.643
  recA Streptococcus pyogenes NZ131

69.538

92.068

0.64
  recA Lactococcus lactis subsp. cremoris KW2

67.069

93.768

0.629
  recA Acinetobacter baylyi ADP1

61.08

99.717

0.609
  recA Neisseria gonorrhoeae MS11

64.371

94.618

0.609
  recA Neisseria gonorrhoeae MS11

64.371

94.618

0.609
  recA Neisseria gonorrhoeae strain FA1090

64.371

94.618

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.875

90.652

0.606
  recA Vibrio cholerae strain A1552

66.875

90.652

0.606
  recA Glaesserella parasuis strain SC1401

60.857

99.15

0.603
  recA Pseudomonas stutzeri DSM 10701

62.463

96.601

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.732

90.935

0.598
  recA Ralstonia pseudosolanacearum GMI1000

68.182

87.252

0.595
  recA Acinetobacter baumannii D1279779

63.415

92.918

0.589
  recA Helicobacter pylori 26695

60.651

95.751

0.581
  recA Helicobacter pylori strain NCTC11637

60.355

95.751

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.963

92.351

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

91.501

0.555

Multiple sequence alignment