Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SSUST1_RS08380 Genome accession   NC_017950
Coordinates   1663058..1663552 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0ABV2ENX4
Organism   Streptococcus suis ST1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1658058..1668552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUST1_RS08360 (SSUST1_1714) - 1660079..1661023 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  SSUST1_RS08365 (SSUST1_1715) - 1661039..1661695 (+) 657 WP_014736330.1 DUF1129 domain-containing protein -
  SSUST1_RS08370 (SSUST1_1716) tnpA 1661834..1662298 (-) 465 WP_002939996.1 IS200/IS605-like element ISSsu4 family transposase -
  SSUST1_RS08375 (SSUST1_1717) rpsR 1662786..1663025 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  SSUST1_RS08380 (SSUST1_1718) ssbA 1663058..1663552 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  SSUST1_RS08385 (SSUST1_1719) rpsF 1663564..1663854 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  SSUST1_RS08390 (SSUST1_1720) - 1664026..1665015 (-) 990 WP_014736331.1 lipoate--protein ligase -
  SSUST1_RS08395 (SSUST1_1722) - 1665199..1666338 (+) 1140 WP_014736333.1 DUF6688 family protein -
  SSUST1_RS08400 (SSUST1_1723) lpdA 1666378..1668138 (-) 1761 WP_024388972.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=43249 SSUST1_RS08380 WP_002942409.1 1663058..1663552(-) (ssbA) [Streptococcus suis ST1]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=43249 SSUST1_RS08380 WP_002942409.1 1663058..1663552(-) (ssbA) [Streptococcus suis ST1]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTACAACTCACCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment