NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	HB753_RS00640	Genome accession	NZ_CP050270
Coordinates	131317..131811 (+)	Length	164 a.a.
NCBI ID	WP_002261867.1	Uniprot ID	A0AAX1K2T1
Organism	Streptococcus mutans strain S4
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 126317..136811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB753_RS00615 (HB753_00615)	-	126677..127726 (+)	1050	WP_014835036.1	zinc-dependent alcohol dehydrogenase family protein	-
HB753_RS00620 (HB753_00620)	mutY	127918..129063 (-)	1146	WP_002265472.1	A/G-specific adenine glycosylase	-
HB753_RS00625 (HB753_00625)	-	130100..130303 (-)	204	WP_019804899.1	hypothetical protein	-
HB753_RS00630 (HB753_00630)	-	130608..130853 (+)	246	WP_019804898.1	hypothetical protein	-
HB753_RS00635 (HB753_00635)	rpsF	131009..131299 (+)	291	WP_002261866.1	30S ribosomal protein S6	-
HB753_RS00640 (HB753_00640)	ssbA	131317..131811 (+)	495	WP_002261867.1	single-stranded DNA-binding protein	Machinery gene
HB753_RS00645 (HB753_00645)	rpsR	131840..132079 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
HB753_RS00650 (HB753_00650)	-	132398..133117 (+)	720	WP_002273460.1	TraX family protein	-
HB753_RS00655 (HB753_00655)	hdrM	133125..133811 (-)	687	WP_002268420.1	hdrR negative regulator HdrM	Regulator
HB753_RS00660 (HB753_00660)	hdrR	133808..134164 (-)	357	WP_002265268.1	LytTR family transcriptional regulator HdrR	Regulator
HB753_RS00665 (HB753_00665)	-	134303..134965 (-)	663	WP_002265267.1	DUF1129 domain-containing protein	-
HB753_RS00670 (HB753_00670)	-	135247..136191 (-)	945	WP_002262667.1	magnesium transporter CorA family protein	-
HB753_RS00675 (HB753_00675)	-	136590..136811 (-)	222	WP_019804897.1	hypothetical protein	-

Sequence

Protein

Download Length: 164 a.a. Molecular weight: 18331.97 Da Isoelectric Point: 4.7187

                                >NTDB_id=431033 HB753_RS00640 WP_002261867.1 131317..131811(+) (ssbA) [Streptococcus mutans strain S4]

MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR

NYENQQGQRVYVTEVVADNFQILESRATREGQSNSYNAGGNNNFGGNNFSSQGSSQSQTPNFARDESPFGDSNPMDISDD

DLPF

Nucleotide

Download Length: 495 bp

                                >NTDB_id=431033 HB753_RS00640 WP_002261867.1 131317..131811(+) (ssbA) [Streptococcus mutans strain S4]

ATGATTAATAATGTAGTACTAGTTGGTCGCATGACTCGTGATGCTGAGCTCCGTTACACCCCAAGTAATCAAGCTGTGGC

AACTTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTCATTAACATCGTGATTT

GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATCCAGACCCGC

AATTATGAAAACCAACAAGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGAAAGTCGTGC

TACACGTGAAGGTCAATCAAACAGTTATAATGCTGGTGGTAACAATAACTTTGGCGGAAATAATTTTTCTTCCCAAGGTT

CTTCACAATCTCAAACGCCAAACTTTGCTAGAGATGAAAGTCCATTTGGTGATTCAAATCCTATGGATATTTCAGACGAT

GATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.062	100	0.616
ssb	Latilactobacillus sakei subsp. sakei 23K	57.059	100	0.591
ssbB/cilA	Streptococcus pneumoniae TIGR4	51.261	72.561	0.372
ssb	Glaesserella parasuis strain SC1401	32.62	100	0.372
ssbB	Streptococcus sobrinus strain NIDR 6715-7	52.632	69.512	0.366
ssbB/cilA	Streptococcus mitis NCTC 12261	50.42	72.561	0.366
ssbB/cilA	Streptococcus pneumoniae Rx1	50.42	72.561	0.366
ssbB/cilA	Streptococcus pneumoniae D39	50.42	72.561	0.366
ssbB/cilA	Streptococcus pneumoniae R6	50.42	72.561	0.366
ssbB/cilA	Streptococcus mitis SK321	50.42	72.561	0.366

Detailed information NTG0431033