Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrR   Type   Regulator
Locus tag   HB753_RS00660 Genome accession   NZ_CP050270
Coordinates   133808..134164 (-) Length   118 a.a.
NCBI ID   WP_002265268.1    Uniprot ID   -
Organism   Streptococcus mutans strain S4     
Function   activate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 128808..139164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB753_RS00625 (HB753_00625) - 130100..130303 (-) 204 WP_019804899.1 hypothetical protein -
  HB753_RS00630 (HB753_00630) - 130608..130853 (+) 246 WP_019804898.1 hypothetical protein -
  HB753_RS00635 (HB753_00635) rpsF 131009..131299 (+) 291 WP_002261866.1 30S ribosomal protein S6 -
  HB753_RS00640 (HB753_00640) ssbA 131317..131811 (+) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  HB753_RS00645 (HB753_00645) rpsR 131840..132079 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  HB753_RS00650 (HB753_00650) - 132398..133117 (+) 720 WP_002273460.1 TraX family protein -
  HB753_RS00655 (HB753_00655) hdrM 133125..133811 (-) 687 WP_002268420.1 hdrR negative regulator HdrM Regulator
  HB753_RS00660 (HB753_00660) hdrR 133808..134164 (-) 357 WP_002265268.1 LytTR family transcriptional regulator HdrR Regulator
  HB753_RS00665 (HB753_00665) - 134303..134965 (-) 663 WP_002265267.1 DUF1129 domain-containing protein -
  HB753_RS00670 (HB753_00670) - 135247..136191 (-) 945 WP_002262667.1 magnesium transporter CorA family protein -
  HB753_RS00675 (HB753_00675) - 136590..136811 (-) 222 WP_019804897.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 14135.44 Da        Isoelectric Point: 10.3902

>NTDB_id=431035 HB753_RS00660 WP_002265268.1 133808..134164(-) (hdrR) [Streptococcus mutans strain S4]
MEIHLNPKHQSVEVFLEREIFFLNIRDILFIEISNRKTYVHTNDKVYKSHLLLRDFKEILPDYFQQIGKSQIANSLEISA
INKSFSSTPKISFRHSSKTTWVSRKYYKELLMKKRSLL

Nucleotide


Download         Length: 357 bp        

>NTDB_id=431035 HB753_RS00660 WP_002265268.1 133808..134164(-) (hdrR) [Streptococcus mutans strain S4]
ATGGAGATTCACTTAAATCCTAAACATCAGTCAGTAGAGGTCTTTTTAGAAAGGGAAATTTTCTTTTTAAATATTAGAGA
TATTCTCTTTATTGAAATCAGCAATCGGAAAACTTATGTTCATACTAATGATAAAGTTTACAAAAGCCATTTGCTTCTGC
GCGATTTCAAAGAAATTTTACCTGATTATTTTCAGCAAATTGGCAAGAGTCAGATTGCCAATAGCCTTGAAATTTCTGCC
ATCAATAAGTCTTTCTCCTCTACCCCCAAAATTAGTTTTAGACATTCATCCAAAACAACTTGGGTATCTCGTAAATACTA
CAAAGAATTACTTATGAAAAAAAGGAGTTTACTATGA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(19-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrR Streptococcus mutans UA159

98.305

100

0.983