Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G8J22_RS05880 Genome accession   NZ_CP050262
Coordinates   1207635..1208777 (+) Length   380 a.a.
NCBI ID   WP_003553664.1    Uniprot ID   -
Organism   Lentilactobacillus hilgardii strain LMG 07934     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1202635..1213777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8J22_RS05860 (G8J22_01194) yfmH 1203760..1205043 (+) 1284 WP_003559979.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  G8J22_RS05865 (G8J22_01195) - 1205128..1206201 (+) 1074 WP_003559981.1 RodZ family helix-turn-helix domain-containing protein -
  G8J22_RS05870 (G8J22_01196) pgsA 1206226..1206807 (+) 582 WP_003559983.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G8J22_RS05875 (G8J22_01197) cinA 1207062..1207538 (+) 477 WP_003553661.1 CinA family protein Machinery gene
  G8J22_RS05880 (G8J22_01198) recA 1207635..1208777 (+) 1143 WP_003553664.1 recombinase RecA Machinery gene
  G8J22_RS05885 (G8J22_01199) rny 1209083..1210666 (+) 1584 WP_035444742.1 ribonuclease Y -
  G8J22_RS05890 (G8J22_01200) - 1210755..1211555 (+) 801 WP_003559986.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 41129.52 Da        Isoelectric Point: 6.5284

>NTDB_id=430939 G8J22_RS05880 WP_003553664.1 1207635..1208777(+) (recA) [Lentilactobacillus hilgardii strain LMG 07934]
MADQRKVALDKALKSIEKEFGKGSIMRMGDKADTQISTIPTGSLALDEALGVGGYPRGRIVEVYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGD
THVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKNGTNIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGKGISQSGELVDMAVDKDIIDKSGSWYSYGEERIGQGRENAKGYLEEHQDMYKEVER
KVRDAYGIPDDADTGNSTKDSSNDDKGTNKKTSDKKTEKPVKTADSNSKSVDNIDLNIGK

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=430939 G8J22_RS05880 WP_003553664.1 1207635..1208777(+) (recA) [Lentilactobacillus hilgardii strain LMG 07934]
ATGGCTGACCAAAGAAAAGTTGCCTTGGATAAGGCGCTAAAAAGTATTGAAAAAGAATTCGGTAAGGGTTCAATTATGCG
TATGGGTGATAAGGCCGATACACAAATTTCAACAATTCCAACTGGTTCCCTGGCTTTGGATGAAGCACTTGGGGTTGGTG
GCTATCCGCGTGGCCGAATCGTTGAGGTTTACGGCCCGGAAAGTTCGGGTAAAACAACCGTTGCTTTACACGCGGTTGCG
GAAGTTCAAAAGCGTGGTGGAACGGCCGCTTATATTGATGCCGAAAATGCACTTGATCCAGTTTATGCAACTCATCTTGG
TGTTAATATTGATGATCTGTTATTATCACAACCGGATACTGGCGAACAGGGTCTCCAAATTACCGATGCCTTGGTCACCA
GTGGTGCAATTGATATTGTTGTAATTGATTCAGTTGCTGCGTTGGTTCCACGTGCGGAAATCGAAGGTGAAATGGGCGAT
ACCCACGTTGGCCTTCAAGCTCGTTTGATGTCCCAAGCGTTAAGAAAATTGTCGGGTACGATTAGTAAAACAAAGACAAT
CGCAATTTTTATTAATCAGATTCGTGAAAAAGTCGGTGTCATGTTTGGAAATCCCGAAACAACACCTGGCGGTCGTGCGC
TAAAATTTTACGCGACAATTAGGCTCGAAATTCGACGAGCTGAACAAATTAAAAATGGCACTAATATTATTGGTAATCGT
GTTCGGATTAAAGTTGTCAAGAACAAGGTTGCACCGCCATTTAAACGTGCAGAAGTCGATATCATGTATGGTAAAGGTAT
TTCCCAGTCCGGTGAGTTGGTTGATATGGCTGTTGATAAAGATATTATTGATAAGTCCGGCTCTTGGTATTCATATGGTG
AGGAACGAATTGGCCAGGGGCGTGAAAATGCTAAGGGCTATTTGGAAGAACACCAAGATATGTACAAAGAGGTCGAGAGA
AAAGTCCGTGATGCTTATGGCATACCAGACGATGCGGATACTGGCAACTCGACTAAAGATAGTTCAAATGATGATAAGGG
TACAAATAAAAAAACAAGCGACAAAAAGACTGAAAAACCTGTCAAAACTGCCGATTCCAACTCAAAATCAGTCGATAATA
TTGATTTAAATATTGGAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

84.146

86.316

0.726
  recA Bacillus subtilis subsp. subtilis str. 168

73.112

87.105

0.637
  recA Streptococcus pneumoniae D39

63.215

96.579

0.611
  recA Streptococcus pneumoniae Rx1

63.215

96.579

0.611
  recA Streptococcus pneumoniae R6

63.215

96.579

0.611
  recA Streptococcus pneumoniae TIGR4

63.215

96.579

0.611
  recA Streptococcus mutans UA159

64.023

92.895

0.595
  recA Lactococcus lactis subsp. cremoris KW2

67.463

88.158

0.595
  recA Streptococcus pyogenes NZ131

67.771

87.368

0.592
  recA Streptococcus mitis NCTC 12261

63.38

93.421

0.592
  recA Streptococcus mitis SK321

65.497

90

0.589
  recA Neisseria gonorrhoeae MS11

62.006

86.579

0.537
  recA Neisseria gonorrhoeae strain FA1090

62.006

86.579

0.537
  recA Neisseria gonorrhoeae MS11

62.006

86.579

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

85.526

0.529
  recA Ralstonia pseudosolanacearum GMI1000

63.898

82.368

0.526
  recA Vibrio cholerae strain A1552

57.849

90.526

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.849

90.526

0.524
  recA Pseudomonas stutzeri DSM 10701

60.991

85

0.518
  recA Acinetobacter baylyi ADP1

60.802

85.263

0.518
  recA Acinetobacter baumannii D1279779

60.494

85.263

0.516
  recA Glaesserella parasuis strain SC1401

57.143

90.263

0.516
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

86.316

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.271

86.579

0.513
  recA Helicobacter pylori 26695

57.975

85.789

0.497
  recA Helicobacter pylori strain NCTC11637

57.975

85.789

0.497