Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   G8J22_RS05875 Genome accession   NZ_CP050262
Coordinates   1207062..1207538 (+) Length   158 a.a.
NCBI ID   WP_003553661.1    Uniprot ID   C0XLC4
Organism   Lentilactobacillus hilgardii strain LMG 07934     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1202062..1212538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8J22_RS05855 (G8J22_01193) yfmF 1202496..1203776 (+) 1281 WP_003559977.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  G8J22_RS05860 (G8J22_01194) yfmH 1203760..1205043 (+) 1284 WP_003559979.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  G8J22_RS05865 (G8J22_01195) - 1205128..1206201 (+) 1074 WP_003559981.1 RodZ family helix-turn-helix domain-containing protein -
  G8J22_RS05870 (G8J22_01196) pgsA 1206226..1206807 (+) 582 WP_003559983.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G8J22_RS05875 (G8J22_01197) cinA 1207062..1207538 (+) 477 WP_003553661.1 CinA family protein Machinery gene
  G8J22_RS05880 (G8J22_01198) recA 1207635..1208777 (+) 1143 WP_003553664.1 recombinase RecA Machinery gene
  G8J22_RS05885 (G8J22_01199) rny 1209083..1210666 (+) 1584 WP_035444742.1 ribonuclease Y -
  G8J22_RS05890 (G8J22_01200) - 1210755..1211555 (+) 801 WP_003559986.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 16992.50 Da        Isoelectric Point: 5.6770

>NTDB_id=430938 G8J22_RS05875 WP_003553661.1 1207062..1207538(+) (cinA) [Lentilactobacillus hilgardii strain LMG 07934]
MSLEQKLVEQLLKKHITITAAESLTAGLFQSTLGNVSGVSKVFEGGFVTYSDKVKEQLLHVPHDVIAENSVVSEPTAIWM
ADQARRIMDKDLAVSFTGVAGPDALEGNPVGTVWIGIAFGAQISYAKKFQFEGLRNQIREAAVEAGLKMALSAITSDK

Nucleotide


Download         Length: 477 bp        

>NTDB_id=430938 G8J22_RS05875 WP_003553661.1 1207062..1207538(+) (cinA) [Lentilactobacillus hilgardii strain LMG 07934]
TTGTCACTTGAACAAAAACTGGTTGAGCAATTATTGAAGAAGCATATTACAATTACTGCTGCAGAAAGTCTAACTGCTGG
GCTGTTTCAGAGCACATTGGGGAATGTTTCCGGTGTTTCAAAGGTTTTTGAAGGGGGATTTGTCACGTATTCTGATAAAG
TTAAGGAACAGTTGCTACATGTTCCTCACGATGTTATTGCTGAAAACAGTGTTGTTAGTGAACCAACGGCTATCTGGATG
GCAGATCAAGCAAGACGAATCATGGATAAAGACTTAGCGGTTTCCTTCACGGGGGTTGCCGGTCCAGATGCCTTGGAGGG
TAATCCTGTCGGAACGGTTTGGATCGGAATTGCTTTTGGGGCACAAATTAGTTATGCTAAAAAGTTCCAGTTTGAAGGAT
TACGTAATCAAATTCGTGAAGCTGCCGTTGAGGCTGGATTAAAAATGGCATTATCCGCTATTACGAGTGACAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(2-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0XLC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae Rx1

49.682

99.367

0.494
  cinA Streptococcus pneumoniae R6

49.682

99.367

0.494
  cinA Streptococcus pneumoniae D39

49.682

99.367

0.494
  cinA Streptococcus pneumoniae TIGR4

49.045

99.367

0.487
  cinA Streptococcus mitis NCTC 12261

46.497

99.367

0.462
  cinA Streptococcus mitis SK321

56.41

74.051

0.418
  cinA Streptococcus mutans UA159

51.282

74.051

0.38
  cinA Bacillus subtilis subsp. subtilis str. 168

39.333

94.937

0.373