Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   HBA50_RS09305 Genome accession   NZ_CP050133
Coordinates   1888051..1888446 (-) Length   131 a.a.
NCBI ID   WP_015604291.1    Uniprot ID   A0A0F2CUG1
Organism   Streptococcus cristatus ATCC 51100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1883051..1893446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS09285 (HBA50_09285) - 1883678..1884268 (-) 591 WP_045498080.1 CDP-archaeol synthase -
  HBA50_RS09290 (HBA50_09290) dtd 1884626..1885069 (-) 444 WP_045498082.1 D-aminoacyl-tRNA deacylase -
  HBA50_RS09295 (HBA50_09295) - 1885115..1887334 (-) 2220 WP_045498084.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  HBA50_RS09300 (HBA50_09300) - 1887609..1887749 (-) 141 WP_166492642.1 hypothetical protein -
  HBA50_RS09305 (HBA50_09305) ssbB/cilA 1888051..1888446 (-) 396 WP_015604291.1 single-stranded DNA-binding protein Machinery gene
  HBA50_RS09310 (HBA50_09310) - 1888525..1889286 (-) 762 WP_037586376.1 SDR family NAD(P)-dependent oxidoreductase -
  HBA50_RS09315 (HBA50_09315) ytpR 1889328..1889954 (-) 627 WP_045498090.1 YtpR family tRNA-binding protein -
  HBA50_RS09320 (HBA50_09320) - 1889985..1890299 (-) 315 WP_005591252.1 thioredoxin family protein -
  HBA50_RS09325 (HBA50_09325) - 1890299..1890583 (-) 285 WP_045498095.1 DUF4651 domain-containing protein -
  HBA50_RS09330 (HBA50_09330) pepA 1890710..1891774 (+) 1065 WP_045498098.1 glutamyl aminopeptidase -
  HBA50_RS09335 (HBA50_09335) - 1891894..1893378 (+) 1485 WP_005591255.1 DUF1846 domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14702.56 Da        Isoelectric Point: 6.4772

>NTDB_id=430239 HBA50_RS09305 WP_015604291.1 1888051..1888446(-) (ssbB/cilA) [Streptococcus cristatus ATCC 51100]
MYNKVIIIGRLTATPELHKTANDKSVARATVAVNRRYKSQNGEREADFINLVVWGRLAETLASYASKGSLISLDGELRSR
RYEKDGTTHYVTEVLCSGFQLLESRAQRALRENNTGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=430239 HBA50_RS09305 WP_015604291.1 1888051..1888446(-) (ssbB/cilA) [Streptococcus cristatus ATCC 51100]
ATGTATAATAAAGTCATCATCATTGGCCGGCTGACGGCTACACCAGAGTTACACAAGACAGCAAATGATAAGTCGGTCGC
GCGTGCGACAGTGGCGGTGAATCGCCGGTACAAGAGCCAAAACGGAGAGCGTGAAGCGGATTTTATCAATCTTGTTGTCT
GGGGACGCTTGGCTGAAACCTTGGCAAGTTATGCTAGTAAGGGGAGTTTGATTTCTCTGGACGGAGAATTGCGGAGCCGC
CGCTATGAAAAGGATGGAACCACTCATTATGTGACAGAAGTTCTTTGCAGCGGCTTTCAGCTTTTAGAAAGCCGAGCCCA
GAGAGCACTCCGTGAGAATAATACTGGGGCAGATCTAGCAGATTTGGTGCTGGAAGAGGAGGAACTCCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2CUG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae Rx1

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae D39

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae R6

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbB/cilA Streptococcus mitis NCTC 12261

82.443

100

0.824
  ssbA Streptococcus mutans UA159

77.863

100

0.779
  ssbB Streptococcus sobrinus strain NIDR 6715-7

73.282

100

0.733
  ssbB Lactococcus lactis subsp. cremoris KW2

58.929

85.496

0.504
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389