Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HAQ15_RS03200 | Genome accession | NZ_CP050079 |
| Coordinates | 663329..663754 (+) | Length | 141 a.a. |
| NCBI ID | WP_166481378.1 | Uniprot ID | - |
| Organism | Pediococcus acidilactici strain PMC48 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 653172..708741 | 663329..663754 | within | 0 |
Gene organization within MGE regions
Location: 653172..708741
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAQ15_RS03120 (HAQ15_03120) | - | 653172..653861 (-) | 690 | WP_008842223.1 | N-acetylmannosamine-6-phosphate 2-epimerase | - |
| HAQ15_RS03125 (HAQ15_03125) | - | 654257..655336 (-) | 1080 | WP_166481369.1 | site-specific integrase | - |
| HAQ15_RS03130 (HAQ15_03130) | - | 655472..656473 (-) | 1002 | WP_166481370.1 | Abi family protein | - |
| HAQ15_RS03135 (HAQ15_03135) | - | 657003..657200 (-) | 198 | WP_166481371.1 | hypothetical protein | - |
| HAQ15_RS03140 (HAQ15_03140) | - | 657434..657784 (-) | 351 | WP_159218511.1 | hypothetical protein | - |
| HAQ15_RS03145 (HAQ15_03145) | - | 657845..658252 (-) | 408 | WP_128212081.1 | ImmA/IrrE family metallo-endopeptidase | - |
| HAQ15_RS03150 (HAQ15_03150) | - | 658261..658602 (-) | 342 | WP_002831842.1 | helix-turn-helix transcriptional regulator | - |
| HAQ15_RS03155 (HAQ15_03155) | - | 658859..659065 (+) | 207 | WP_159215549.1 | hypothetical protein | - |
| HAQ15_RS03160 (HAQ15_03160) | - | 659055..659363 (-) | 309 | WP_166481373.1 | hypothetical protein | - |
| HAQ15_RS03165 (HAQ15_03165) | - | 659422..659640 (+) | 219 | WP_002833157.1 | helix-turn-helix transcriptional regulator | - |
| HAQ15_RS03170 (HAQ15_03170) | - | 659825..660028 (-) | 204 | WP_029258004.1 | hypothetical protein | - |
| HAQ15_RS03175 (HAQ15_03175) | - | 660086..660853 (+) | 768 | WP_166481374.1 | phage antirepressor | - |
| HAQ15_RS03180 (HAQ15_03180) | - | 660866..661072 (+) | 207 | WP_166481375.1 | hypothetical protein | - |
| HAQ15_RS03185 (HAQ15_03185) | - | 661339..661956 (-) | 618 | WP_159209346.1 | hypothetical protein | - |
| HAQ15_RS03190 (HAQ15_03190) | - | 662182..662637 (+) | 456 | WP_166481376.1 | chromosome segregation protein SMC | - |
| HAQ15_RS03195 (HAQ15_03195) | - | 662638..663336 (+) | 699 | WP_166481377.1 | ERF family protein | - |
| HAQ15_RS03200 (HAQ15_03200) | ssb | 663329..663754 (+) | 426 | WP_166481378.1 | single-stranded DNA-binding protein | Machinery gene |
| HAQ15_RS03205 (HAQ15_03205) | - | 663766..664443 (+) | 678 | WP_128472133.1 | putative HNHc nuclease | - |
| HAQ15_RS03210 (HAQ15_03210) | - | 664433..664657 (+) | 225 | WP_128472134.1 | hypothetical protein | - |
| HAQ15_RS03215 (HAQ15_03215) | - | 664661..664909 (-) | 249 | WP_128472135.1 | hypothetical protein | - |
| HAQ15_RS03220 (HAQ15_03220) | - | 664943..665704 (+) | 762 | WP_128472136.1 | conserved phage C-terminal domain-containing protein | - |
| HAQ15_RS03225 (HAQ15_03225) | - | 665685..666500 (+) | 816 | WP_166481379.1 | ATP-binding protein | - |
| HAQ15_RS03230 (HAQ15_03230) | - | 666618..667250 (+) | 633 | WP_166481380.1 | RNA polymerase subunit sigma-70 | - |
| HAQ15_RS03235 (HAQ15_03235) | - | 667231..667632 (+) | 402 | WP_166481381.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HAQ15_RS03240 (HAQ15_03240) | - | 667629..667793 (+) | 165 | WP_166481382.1 | hypothetical protein | - |
| HAQ15_RS03245 (HAQ15_03245) | - | 667765..668133 (+) | 369 | WP_166481383.1 | N-acetylmuramoyl-L-alanine amidase | - |
| HAQ15_RS03250 (HAQ15_03250) | - | 668218..668652 (+) | 435 | WP_166481384.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| HAQ15_RS03255 (HAQ15_03255) | - | 669194..669346 (+) | 153 | WP_166481385.1 | hypothetical protein | - |
| HAQ15_RS03260 (HAQ15_03260) | - | 669315..669827 (+) | 513 | WP_166481386.1 | HNH endonuclease | - |
| HAQ15_RS03265 (HAQ15_03265) | - | 669925..670182 (+) | 258 | WP_166481387.1 | hypothetical protein | - |
| HAQ15_RS03270 (HAQ15_03270) | - | 670372..670830 (+) | 459 | WP_166481388.1 | phage terminase small subunit P27 family | - |
| HAQ15_RS03275 (HAQ15_03275) | - | 670833..672731 (+) | 1899 | WP_166481389.1 | terminase TerL endonuclease subunit | - |
| HAQ15_RS03280 (HAQ15_03280) | - | 672721..672915 (+) | 195 | WP_024863127.1 | DUF1056 family protein | - |
| HAQ15_RS03285 (HAQ15_03285) | - | 672918..674111 (+) | 1194 | WP_166481390.1 | phage portal protein | - |
| HAQ15_RS03290 (HAQ15_03290) | - | 674089..674838 (+) | 750 | WP_159209379.1 | head maturation protease, ClpP-related | - |
| HAQ15_RS03295 (HAQ15_03295) | - | 674838..676070 (+) | 1233 | WP_166481391.1 | phage major capsid protein | - |
| HAQ15_RS03300 (HAQ15_03300) | - | 676143..676475 (+) | 333 | WP_024863131.1 | head-tail connector protein | - |
| HAQ15_RS03305 (HAQ15_03305) | - | 676465..676827 (+) | 363 | WP_166481392.1 | phage head closure protein | - |
| HAQ15_RS03310 (HAQ15_03310) | - | 676814..677221 (+) | 408 | WP_166481393.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| HAQ15_RS03315 (HAQ15_03315) | - | 677221..677601 (+) | 381 | WP_166481394.1 | DUF806 family protein | - |
| HAQ15_RS03320 (HAQ15_03320) | - | 677615..678319 (+) | 705 | WP_166481395.1 | phage tail protein | - |
| HAQ15_RS03325 (HAQ15_03325) | - | 678396..678770 (+) | 375 | WP_159209317.1 | phage tail assembly chaperone | - |
| HAQ15_RS03330 (HAQ15_03330) | - | 678815..679000 (+) | 186 | WP_053905877.1 | hypothetical protein | - |
| HAQ15_RS03335 (HAQ15_03335) | - | 679030..683685 (+) | 4656 | WP_166481396.1 | tape measure protein | - |
| HAQ15_RS03340 (HAQ15_03340) | - | 683762..685531 (+) | 1770 | WP_166481397.1 | phage tail domain-containing protein | - |
| HAQ15_RS03345 (HAQ15_03345) | - | 685552..687912 (+) | 2361 | WP_166481398.1 | phage tail spike protein | - |
| HAQ15_RS03350 (HAQ15_03350) | - | 687914..691207 (+) | 3294 | WP_166481399.1 | hypothetical protein | - |
| HAQ15_RS03355 (HAQ15_03355) | - | 691200..691427 (+) | 228 | WP_166481400.1 | hypothetical protein | - |
| HAQ15_RS03360 (HAQ15_03360) | - | 691420..691629 (+) | 210 | WP_166481401.1 | hypothetical protein | - |
| HAQ15_RS03365 (HAQ15_03365) | - | 691672..691920 (+) | 249 | WP_166481402.1 | hypothetical protein | - |
| HAQ15_RS03370 (HAQ15_03370) | - | 691937..692296 (+) | 360 | WP_166481403.1 | hypothetical protein | - |
| HAQ15_RS03375 (HAQ15_03375) | - | 692308..693471 (+) | 1164 | WP_166481404.1 | GH25 family lysozyme | - |
| HAQ15_RS03380 (HAQ15_03380) | - | 693471..693734 (+) | 264 | WP_138492841.1 | hemolysin XhlA family protein | - |
| HAQ15_RS03385 (HAQ15_03385) | - | 693744..694109 (+) | 366 | WP_159215953.1 | phage holin | - |
| HAQ15_RS03390 (HAQ15_03390) | map | 694570..695352 (+) | 783 | WP_002830702.1 | type I methionyl aminopeptidase | - |
| HAQ15_RS03395 (HAQ15_03395) | - | 696258..697094 (+) | 837 | WP_232623523.1 | ROK family protein | - |
| HAQ15_RS03400 (HAQ15_03400) | - | 697075..697806 (+) | 732 | WP_008842377.1 | TIM barrel protein | - |
| HAQ15_RS03405 (HAQ15_03405) | - | 698059..699567 (+) | 1509 | WP_166481405.1 | sodium:solute symporter | - |
| HAQ15_RS03410 (HAQ15_03410) | - | 699582..700499 (+) | 918 | WP_008842374.1 | dihydrodipicolinate synthase family protein | - |
| HAQ15_RS03415 (HAQ15_03415) | - | 701248..701583 (+) | 336 | WP_005919288.1 | hypothetical protein | - |
| HAQ15_RS03420 (HAQ15_03420) | - | 701743..701961 (+) | 219 | WP_166481406.1 | KxYKxGKxW signal peptide domain-containing protein | - |
| HAQ15_RS03425 (HAQ15_03425) | - | 702788..708388 (-) | 5601 | WP_166481407.1 | hypothetical protein | - |
| HAQ15_RS03430 (HAQ15_03430) | - | 708532..708741 (+) | 210 | WP_166481408.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15654.36 Da Isoelectric Point: 6.3503
>NTDB_id=429944 HAQ15_RS03200 WP_166481378.1 663329..663754(+) (ssb) [Pediococcus acidilactici strain PMC48]
MINRTILIGRLTKDVEVRYTAKGDAVASFTVAVNRQFTNSQGEREADFINCVMWRKAAENFAKYTQKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSLLDSKPKGNQQNNARQASTPGDPFANGGQSIDISDDDLPF
MINRTILIGRLTKDVEVRYTAKGDAVASFTVAVNRQFTNSQGEREADFINCVMWRKAAENFAKYTQKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSLLDSKPKGNQQNNARQASTPGDPFANGGQSIDISDDDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=429944 HAQ15_RS03200 WP_166481378.1 663329..663754(+) (ssb) [Pediococcus acidilactici strain PMC48]
ATGATTAATCGAACAATACTAATAGGACGTTTAACTAAAGATGTTGAGGTTCGCTACACAGCTAAAGGCGATGCGGTAGC
TAGTTTTACCGTGGCAGTTAACCGACAGTTTACCAACTCACAGGGTGAACGTGAAGCGGATTTCATTAACTGCGTAATGT
GGCGGAAAGCGGCGGAAAACTTTGCCAAGTACACACAAAAAGGTTCGTTGGTAGGCATTGACGGTCGAATTCAAACCCGT
TCGTACGAAAATCAACAAGGACAACGAGTTTATGTAACTGAGGTTGTAGCTGATAACTTCTCGTTGCTAGATTCAAAACC
AAAAGGCAACCAGCAAAATAACGCACGGCAAGCATCAACGCCGGGAGATCCATTCGCCAATGGCGGACAGTCAATTGATA
TTAGTGACGACGATTTACCGTTCTAG
ATGATTAATCGAACAATACTAATAGGACGTTTAACTAAAGATGTTGAGGTTCGCTACACAGCTAAAGGCGATGCGGTAGC
TAGTTTTACCGTGGCAGTTAACCGACAGTTTACCAACTCACAGGGTGAACGTGAAGCGGATTTCATTAACTGCGTAATGT
GGCGGAAAGCGGCGGAAAACTTTGCCAAGTACACACAAAAAGGTTCGTTGGTAGGCATTGACGGTCGAATTCAAACCCGT
TCGTACGAAAATCAACAAGGACAACGAGTTTATGTAACTGAGGTTGTAGCTGATAACTTCTCGTTGCTAGATTCAAAACC
AAAAGGCAACCAGCAAAATAACGCACGGCAAGCATCAACGCCGGGAGATCCATTCGCCAATGGCGGACAGTCAATTGATA
TTAGTGACGACGATTTACCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.412 |
100 |
0.716 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.651 |
100 |
0.667 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.037 |
76.596 |
0.475 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.254 |
100 |
0.426 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.254 |
100 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.254 |
100 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.549 |
100 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.549 |
100 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.549 |
100 |
0.418 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.549 |
100 |
0.418 |
| ssbA | Streptococcus mutans UA159 |
38.732 |
100 |
0.39 |