Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G8D99_RS13935 Genome accession   NZ_CP049916
Coordinates   3054866..3056092 (+) Length   408 a.a.
NCBI ID   WP_166326905.1    Uniprot ID   A0A6G8S798
Organism   Acinetobacter lanii strain 185     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3049866..3061092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8D99_RS13895 (G8D99_13895) rimP 3050370..3050894 (-) 525 WP_166326897.1 ribosome maturation factor RimP -
  G8D99_RS13920 (G8D99_13920) secG 3051731..3052060 (-) 330 WP_166326899.1 preprotein translocase subunit SecG -
  G8D99_RS13925 (G8D99_13925) tpiA 3052073..3052864 (-) 792 WP_166326901.1 triose-phosphate isomerase -
  G8D99_RS13930 (G8D99_13930) pilB 3053131..3054840 (+) 1710 WP_166326903.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G8D99_RS13935 (G8D99_13935) pilC 3054866..3056092 (+) 1227 WP_166326905.1 type II secretion system F family protein Machinery gene
  G8D99_RS15820 (G8D99_13940) pilD 3056092..3056955 (+) 864 WP_166326907.1 A24 family peptidase Machinery gene
  G8D99_RS13945 (G8D99_13945) coaE 3056994..3057596 (+) 603 WP_166326909.1 dephospho-CoA kinase -
  G8D99_RS13950 (G8D99_13950) - 3057642..3058559 (-) 918 WP_166327793.1 DMT family transporter -
  G8D99_RS13955 (G8D99_13955) rlmB 3058610..3059359 (-) 750 WP_166326911.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G8D99_RS13960 (G8D99_13960) - 3059502..3059825 (-) 324 WP_166326913.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44949.37 Da        Isoelectric Point: 9.8962

>NTDB_id=428650 G8D99_RS13935 WP_166326905.1 3054866..3056092(+) (pilC) [Acinetobacter lanii strain 185]
MAVKKAQMMPTFSYDGVDRKGVKVKGELPARNMQLAKVTLRKQGITIKSIREKRKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLDNPAMREVVLGIKGEVEGGNTFAGALKKYPQHFDQLFCSLVESGEQSGALETMLDRVAIYK
EKSEILKQKIKKAMKYPMAVIVVAFIVTGILMVKVVPVFSEMFASFGAELPAFTQMVVGMSNWTQKYWFILLLVIIAMIY
GFLETKKRSKKFRDTLDKMALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALTSTAGATNNVVYEEAVLRIRDDVS
TGQQLQFAMRATNLFPSMAIQMVAIGEESGALDAMLDKVATHYESEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=428650 G8D99_RS13935 WP_166326905.1 3054866..3056092(+) (pilC) [Acinetobacter lanii strain 185]
ATGGCGGTCAAGAAAGCACAGATGATGCCGACATTTTCTTACGATGGGGTGGATCGTAAGGGCGTTAAAGTTAAAGGGGA
ATTGCCTGCACGTAATATGCAATTGGCAAAGGTTACACTGAGAAAACAAGGCATCACCATCAAGAGTATTCGAGAAAAAC
GTAAAAACATTCTCGAAGGCTTAATGAAAAAAAAGGTATCAACACTCGATATCACAATTTTTACCCGTCAGTTGGCGACC
ATGATGAAAGCTGGTGTGCCCTTGGTACAAAGCTTTGAAATTGTCGCAGAAGGCTTAGACAATCCAGCCATGCGTGAAGT
GGTGCTCGGCATTAAAGGTGAAGTTGAAGGCGGGAATACCTTTGCTGGAGCGTTAAAGAAATACCCACAGCATTTCGACC
AATTGTTTTGCTCACTGGTAGAATCGGGTGAACAATCCGGTGCGCTTGAGACCATGCTCGATCGTGTTGCGATTTATAAA
GAAAAAAGCGAAATCCTTAAACAAAAAATTAAAAAAGCCATGAAATATCCAATGGCTGTCATTGTGGTCGCATTTATTGT
CACAGGCATTTTGATGGTCAAAGTGGTGCCGGTATTCTCTGAGATGTTTGCATCCTTCGGTGCAGAACTGCCTGCCTTTA
CCCAAATGGTGGTCGGCATGTCAAATTGGACACAAAAATATTGGTTTATTCTGTTGTTAGTGATCATTGCCATGATTTAT
GGCTTTCTTGAGACCAAAAAACGCAGTAAAAAATTCCGTGACACCTTAGATAAGATGGCACTCAAAGCCCCAATTTTTGG
GGATTTGGTCTATAAAGCGATTATTGCCCGTTATAGCCGTACCTTATCCACCACATTCGCAGCAGGCGTACCACTGATTG
ATGCACTGACCTCTACCGCAGGGGCCACCAACAACGTGGTTTATGAAGAAGCGGTGCTACGAATTCGCGATGATGTCTCG
ACCGGTCAGCAACTGCAATTTGCCATGCGTGCGACCAATCTTTTTCCATCGATGGCGATCCAAATGGTCGCCATTGGTGA
GGAATCGGGTGCCCTCGATGCCATGCTCGATAAAGTCGCAACGCATTATGAAAGTGAGGTCGACAATGCGGTCGATGGTC
TCACCTCAATGATGGAACCCTTAATTATGGCGGTACTCGGTGTCTTGGTCGGTGGTCTTGTGATTGCCATGTACCTTCCA
ATTTTCCAAATGGGTTCTGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

85.784

100

0.858
  pilC Acinetobacter baylyi ADP1

81.863

100

0.819
  pilC Pseudomonas stutzeri DSM 10701

60.741

99.265

0.603
  pilC Legionella pneumophila strain ERS1305867

52.099

99.265

0.517
  pilG Neisseria gonorrhoeae MS11

48.312

94.363

0.456
  pilG Neisseria meningitidis 44/76-A

48.052

94.363

0.453
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

40.447

98.775

0.4
  pilC Thermus thermophilus HB27

36.908

98.284

0.363