NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	G8D99_RS15820	Genome accession	NZ_CP049916
Coordinates	3056092..3056955 (+)	Length	287 a.a.
NCBI ID	WP_166326907.1	Uniprot ID	A0A6G8S7D0
Organism	Acinetobacter lanii strain 185
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3051092..3061955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G8D99_RS13920 (G8D99_13920)	secG	3051731..3052060 (-)	330	WP_166326899.1	preprotein translocase subunit SecG	-
G8D99_RS13925 (G8D99_13925)	tpiA	3052073..3052864 (-)	792	WP_166326901.1	triose-phosphate isomerase	-
G8D99_RS13930 (G8D99_13930)	pilB	3053131..3054840 (+)	1710	WP_166326903.1	type IV-A pilus assembly ATPase PilB	Machinery gene
G8D99_RS13935 (G8D99_13935)	pilC	3054866..3056092 (+)	1227	WP_166326905.1	type II secretion system F family protein	Machinery gene
G8D99_RS15820 (G8D99_13940)	pilD	3056092..3056955 (+)	864	WP_166326907.1	A24 family peptidase	Machinery gene
G8D99_RS13945 (G8D99_13945)	coaE	3056994..3057596 (+)	603	WP_166326909.1	dephospho-CoA kinase	-
G8D99_RS13950 (G8D99_13950)	-	3057642..3058559 (-)	918	WP_166327793.1	DMT family transporter	-
G8D99_RS13955 (G8D99_13955)	rlmB	3058610..3059359 (-)	750	WP_166326911.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
G8D99_RS13960 (G8D99_13960)	-	3059502..3059825 (-)	324	WP_166326913.1	pyrimidine/purine nucleoside phosphorylase	-
G8D99_RS13965 (G8D99_13965)	-	3059896..3061206 (-)	1311	WP_166326915.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 287 a.a. Molecular weight: 32200.64 Da Isoelectric Point: 8.0668

                                >NTDB_id=428660 G8D99_RS15820 WP_166326907.1 3056092..3056955(+) (pilD) [Acinetobacter lanii strain 185]

MNELIAYFIQNPIALYIAVGVLSLCIGSFLNVVIFRTPKMMEQEWQQECQMLLHPEQPIIDHSKLTLSKPASTCPKCHTE

IRWYQNIPVISWLMLRGKCGTCQNPISARYPLIELLTALCSLIVVAVFGPTMQMLFGLILTWVLIALTFIDFDTQLLPDR

YTLPLAALGLAINSYALYTSPTSAIWGYVIGFLCLWVVYYLFKVVTGKEGMGYGDFKLLAALGAWMGPFMLPLIVLLSSL

VGAIIGIVLLKIRKQNQPFAFGPYIAIAGWIAFLWGDQIMRVYLGNF

Nucleotide

Download Length: 864 bp

                                >NTDB_id=428660 G8D99_RS15820 WP_166326907.1 3056092..3056955(+) (pilD) [Acinetobacter lanii strain 185]

ATGAACGAACTAATTGCGTATTTTATTCAAAACCCTATAGCCCTCTACATTGCTGTGGGTGTGCTCAGCCTATGTATCGG

TAGCTTCCTGAATGTGGTGATTTTCCGCACCCCAAAAATGATGGAACAAGAATGGCAGCAAGAGTGCCAAATGCTACTCC

ATCCTGAACAACCGATCATTGATCACTCAAAACTCACCCTCAGCAAGCCAGCATCGACTTGTCCCAAATGTCACACTGAA

ATCCGCTGGTATCAAAATATTCCAGTGATCAGTTGGCTGATGCTGCGTGGTAAATGTGGCACTTGCCAAAATCCAATCAG

TGCACGTTATCCCCTGATCGAACTCCTGACTGCACTATGCTCACTGATTGTGGTGGCAGTATTTGGCCCGACCATGCAAA

TGCTATTTGGTTTGATTTTGACTTGGGTATTGATTGCACTTACTTTTATCGATTTCGATACACAACTTTTGCCGGATCGT

TATACCCTACCCTTAGCTGCACTGGGTCTCGCCATTAACAGTTATGCGCTATACACCTCTCCAACTTCTGCGATTTGGGG

CTATGTAATTGGCTTTTTGTGTTTGTGGGTGGTGTACTACTTATTTAAAGTGGTCACAGGCAAAGAAGGCATGGGCTATG

GTGACTTTAAACTGCTTGCCGCTTTAGGGGCGTGGATGGGGCCGTTCATGTTGCCCTTAATTGTGTTGTTGTCTTCATTG

GTTGGTGCCATCATTGGCATTGTGCTACTAAAAATCAGAAAACAGAATCAACCTTTTGCTTTTGGTCCTTATATTGCCAT

TGCCGGTTGGATCGCTTTCTTGTGGGGCGACCAGATCATGCGGGTTTATCTCGGTAACTTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A6G8S7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	83.217	99.652	0.829
pilD	Acinetobacter baumannii D1279779	82.867	99.652	0.826
pilD	Vibrio cholerae strain A1552	55.431	93.031	0.516
pilD	Vibrio campbellii strain DS40M4	54.244	94.425	0.512
pilD	Neisseria gonorrhoeae MS11	48	95.819	0.46

Detailed information NTG0428660