Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G8E00_RS14460 Genome accession   NZ_CP049801
Coordinates   3181962..3183194 (+) Length   410 a.a.
NCBI ID   WP_166225725.1    Uniprot ID   A0A6G8RYN6
Organism   Acinetobacter shaoyimingii strain 323-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3176962..3188194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E00_RS14420 (G8E00_14415) rimP 3177335..3177859 (-) 525 WP_166011214.1 ribosome maturation factor RimP -
  G8E00_RS14445 (G8E00_14440) secG 3178827..3179156 (-) 330 WP_166225718.1 preprotein translocase subunit SecG -
  G8E00_RS14450 (G8E00_14445) tpiA 3179170..3179961 (-) 792 WP_166011218.1 triose-phosphate isomerase -
  G8E00_RS14455 (G8E00_14450) pilB 3180223..3181935 (+) 1713 WP_166225722.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G8E00_RS14460 (G8E00_14455) pilC 3181962..3183194 (+) 1233 WP_166225725.1 type II secretion system F family protein Machinery gene
  G8E00_RS14465 (G8E00_14460) pilD 3183229..3184089 (+) 861 WP_166225728.1 A24 family peptidase Machinery gene
  G8E00_RS14470 (G8E00_14465) coaE 3184117..3184728 (+) 612 WP_166225731.1 dephospho-CoA kinase -
  G8E00_RS14475 (G8E00_14470) - 3184725..3185645 (-) 921 WP_166011229.1 DMT family transporter -
  G8E00_RS14480 (G8E00_14475) rlmB 3185711..3186457 (-) 747 WP_166011231.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G8E00_RS14485 (G8E00_14480) - 3186590..3186913 (-) 324 WP_166011233.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45196.63 Da        Isoelectric Point: 9.8406

>NTDB_id=427920 G8E00_RS14460 WP_166225725.1 3181962..3183194(+) (pilC) [Acinetobacter shaoyimingii strain 323-1]
MAVKKGQMMPVYAYDGVDRKGAKVKGEMPARNMQLAKVTLRKQGITIKSIREKKKNPLESLMKKKVTTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMRDVVLGIKGEVEGGNTFAGALKKYPQYFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKALKYPISVIVVAFIVTIILMVKVVPVFQELFSSFGADLPAFTQLVVNMSNWTKKYWFVLIIAIVAIIF
TFLETKKRSKKFRDLLDKAALKAPIFGDLIFKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIRDDIA
TGQQLQFAMRATNLFPSMAVQMVAIGEESGALDDMLDKVATYYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVVGA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=427920 G8E00_RS14460 WP_166225725.1 3181962..3183194(+) (pilC) [Acinetobacter shaoyimingii strain 323-1]
ATGGCCGTAAAGAAAGGGCAAATGATGCCGGTTTATGCTTACGATGGGGTTGATCGTAAAGGGGCTAAAGTTAAAGGTGA
AATGCCAGCACGTAATATGCAGTTGGCTAAAGTGACTTTGCGCAAACAAGGGATCACGATTAAATCGATTCGAGAGAAAA
AGAAAAACCCTCTCGAGTCATTAATGAAAAAGAAAGTCACAACTTTAGATATCACCATCTTCACACGTCAGCTCGCGACC
ATGATGAAAGCTGGTGTACCCCTTGTACAAAGCTTTGAAATCGTAGCAGAAGGTTTAGAAAATCCTTCAATGCGAGATGT
TGTATTGGGCATTAAAGGGGAAGTTGAAGGCGGTAATACCTTTGCGGGTGCTTTAAAAAAATATCCGCAATATTTTGATA
AGCTGTTTTGTTCATTGGTTGAATCTGGTGAACAATCTGGTGCACTTGAGACCATGCTCGATCGTGTGGCGATCTACAAA
GAAAAGAGTGAATTACTCAAACAAAAAATTAAGAAGGCACTAAAATATCCAATTTCAGTTATTGTTGTGGCATTCATTGT
TACGATTATTTTGATGGTAAAAGTCGTTCCAGTCTTCCAAGAATTATTTAGTTCATTTGGAGCTGACTTACCAGCCTTTA
CACAATTGGTCGTAAACATGTCGAATTGGACCAAAAAATATTGGTTTGTATTAATTATAGCCATTGTTGCCATTATTTTT
ACTTTTTTGGAAACAAAGAAACGTAGTAAAAAATTCCGCGACTTGCTTGATAAAGCAGCACTTAAAGCACCTATTTTCGG
TGACCTAATCTTTAAAGCGATTATTGCGCGTTATAGCCGTACCTTATCAACCACTTTTGCAGCTGGTGTGCCTTTGATTG
ATGCTTTAGAGTCAACAGCAGGTGCAACCAATAATGTCGTTTATGAAGAAGCAGTTATGAAGATTCGTGACGATATTGCA
ACAGGTCAACAACTTCAATTTGCAATGCGTGCTACTAACCTATTCCCCTCTATGGCAGTCCAGATGGTGGCGATCGGTGA
AGAATCTGGTGCACTCGATGACATGTTAGATAAAGTTGCAACCTATTATGAAAATGAAGTGGATAACGCAGTCGATGGCT
TAACTTCAATGATGGAGCCTTTAATCATGGCAGTACTGGGTGTTTTAGTCGGTGGTCTGGTGATTGCCATGTACCTTCCT
ATTTTCCAAATGGGTTCCGTGGTCGGTGCTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8RYN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

85.294

99.512

0.849
  pilC Acinetobacter baylyi ADP1

80.392

99.512

0.8
  pilC Pseudomonas stutzeri DSM 10701

59.799

97.073

0.58
  pilC Legionella pneumophila strain ERS1305867

53.149

96.829

0.515
  pilG Neisseria meningitidis 44/76-A

48.571

93.902

0.456
  pilG Neisseria gonorrhoeae MS11

48.571

93.902

0.456
  pilC Vibrio cholerae strain A1552

44.01

99.756

0.439
  pilC Vibrio campbellii strain DS40M4

42.25

97.561

0.412
  pilC Thermus thermophilus HB27

37.157

97.805

0.363