Detailed information NTG0423476

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: G4D54_RS16675
• Genome accession: NZ_CP048838
• Coordinates: 3418225..3418686 (+)
• Length: 153 a.a.
• NCBI ID: WP_002605736.1
• Uniprot ID: -
• Organism: [Clostridium] innocuum strain ATCC 14501
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3413225..3423686

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G4D54_RS16635 (G4D54_16635)	-	3413864..3414196 (-)	333	WP_002609431.1	branched-chain amino acid transporter permease	-
G4D54_RS16640 (G4D54_16640)	-	3414193..3414882 (-)	690	WP_002609429.1	AzlC family ABC transporter permease	-
G4D54_RS16650 (G4D54_16650)	-	3415760..3416128 (+)	369	WP_233105656.1	hypothetical protein	-
G4D54_RS16655 (G4D54_16655)	-	3416350..3417204 (+)	855	WP_002605740.1	hypothetical protein	-
G4D54_RS16660 (G4D54_16660)	-	3417210..3417410 (+)	201	WP_002605739.1	hypothetical protein	-
G4D54_RS16665 (G4D54_16665)	-	3417385..3417870 (+)	486	WP_002605738.1	class I SAM-dependent methyltransferase	-
G4D54_RS16675 (G4D54_16675)	ssb	3418225..3418686 (+)	462	WP_002605736.1	single-stranded DNA-binding protein	Machinery gene
G4D54_RS16680 (G4D54_16680)	-	3418704..3419489 (+)	786	WP_233105687.1	hypothetical protein	-
G4D54_RS16685 (G4D54_16685)	-	3419495..3419965 (+)	471	WP_002605734.1	helix-turn-helix transcriptional regulator	-
G4D54_RS16690 (G4D54_16690)	-	3420123..3420371 (+)	249	WP_002605732.1	hypothetical protein	-
G4D54_RS16695 (G4D54_16695)	-	3420358..3420606 (+)	249	WP_233105686.1	hypothetical protein	-
G4D54_RS16700 (G4D54_16700)	-	3420640..3421017 (+)	378	WP_002605730.1	hypothetical protein	-
G4D54_RS16705 (G4D54_16705)	-	3421019..3421213 (+)	195	WP_002605729.1	hypothetical protein	-
G4D54_RS16710 (G4D54_16710)	-	3421225..3422277 (+)	1053	WP_002605728.1	hypothetical protein	-
G4D54_RS16715 (G4D54_16715)	-	3422342..3422725 (+)	384	WP_002605727.1	hypothetical protein	-
G4D54_RS16720 (G4D54_16720)	-	3422795..3423403 (+)	609	WP_002605725.1	hypothetical protein	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 16780.62 Da
• Isoelectric Point: 5.2136

>NTDB_id=423476 G4D54_RS16675 WP_002605736.1 3418225..3418686(+) (ssb) [[Clostridium] innocuum strain ATCC 14501]
MINRVVLVGRLTKDPVLRKTTNGASVVSFTVACNRLFKQEGQPEADFINTVIWNKTADSVAKYTHKGSLVGVEGRIQTRS
YDDKDGKRVYVTEVVADNVRFLDSRNAGGTNSAYVPGQESMQSSTDTSNSYPSFSNEFTSIAALDISDDDLPF

Nucleotide

• Length: 462 bp

>NTDB_id=423476 G4D54_RS16675 WP_002605736.1 3418225..3418686(+) (ssb) [[Clostridium] innocuum strain ATCC 14501]
ATGATCAATAGAGTTGTATTAGTGGGAAGATTGACGAAGGACCCTGTATTACGGAAGACGACGAATGGCGCATCGGTCGT
GTCTTTTACGGTCGCATGTAACCGGCTTTTCAAACAGGAGGGACAGCCAGAAGCTGACTTCATCAACACTGTCATCTGGA
ACAAGACCGCGGACAGTGTAGCAAAGTATACGCACAAGGGCTCTCTGGTAGGTGTAGAGGGCCGTATCCAAACACGCAGT
TATGATGACAAAGACGGCAAACGTGTATATGTAACAGAGGTGGTCGCAGATAATGTGCGCTTTTTGGATAGTAGGAATGC
GGGAGGTACGAACAGTGCCTACGTACCAGGACAGGAAAGCATGCAGAGCAGCACTGATACGAGCAACAGCTATCCATCCT
TCTCCAATGAGTTCACGAGTATTGCAGCGCTGGATATCTCCGATGACGATCTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	47.647	100	0.529
ssbA	Bacillus subtilis subsp. subtilis str. 168	45.143	100	0.516
ssbB	Bacillus subtilis subsp. subtilis str. 168	59.434	69.281	0.412
ssbB/cilA	Streptococcus mitis NCTC 12261	38.312	100	0.386
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.662	100	0.379
ssbB/cilA	Streptococcus pneumoniae Rx1	37.013	100	0.373
ssbB/cilA	Streptococcus pneumoniae D39	37.013	100	0.373
ssbB/cilA	Streptococcus pneumoniae R6	37.013	100	0.373
ssbB/cilA	Streptococcus mitis SK321	37.013	100	0.373
ssb	Neisseria meningitidis MC58	32.37	100	0.366
ssb	Neisseria gonorrhoeae MS11	32.37	100	0.366